LOCUS BC057809 1353 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens activated leukocyte cell adhesion molecule, mRNA (cDNA
clone IMAGE:4814389), complete cds.
ACCESSION BC057809
VERSION BC057809.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1353)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1353)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: l Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4502028
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1353
/db_xref="H-InvDB:HIT000259746"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4814389"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1353
/gene="ALCAM"
/gene_synonym="CD166"
/gene_synonym="MEMD"
/db_xref="GeneID:214"
/db_xref="MIM:601662"
CDS 501..902
/gene="ALCAM"
/gene_synonym="CD166"
/gene_synonym="MEMD"
/codon_start=1
/product="ALCAM protein"
/protein_id="AAH57809.1"
/db_xref="GeneID:214"
/db_xref="MIM:601662"
/translation="MESKGASSCRLLFCLLISATVFRPGLGWYTVNSAYGDTIIIPCR
LDVPQNLMFGKWKYEKPDGSPVFIAFRSSTKKSVQYDDVPEYKDRLNLSENYTLSISN
ARISDEKRFVCMLVTEDNVFEAPTIVKVFSK"
BASE COUNT 392 a 309 c 331 g 321 t
ORIGIN
1 agagcagccc ggagaccgct gccgccgctg ccgctgctac caccgctgcc acctgaggag
61 acccgccgcc cccccgtcgc cgcctcctgc gagtccttct tagcacctgg cgtttaatgc
121 acattgccac tgccattatt attatcattc caatacaagg aaaataaaag aagataccag
181 cgaaaagaac cgcttacacc tttccgaatt actcaagtgt ctcctggaaa cagagggtcg
241 ttgtccccgg aggagcagcc gaagggcccg tgggctggtg ttgaccggga gggaggagga
301 gttgggggca ttgcgtggtg gaaagttgcg tgcggcagag aaccgaaggt gcagcgccac
361 agcccagggg acggtgtgtc tgggagaaga cgctgcccct gcgtcgggac ccgccagcgc
421 gcgggcaccg cggggcccgg gacgacgccc cctcctgcgg cgtggactcc gtcagtggcc
481 caccaagaag gaggaggaat atggaatcca agggggccag ttcctgccgt ctgctcttct
541 gcctcttgat ctccgccacc gtcttcaggc caggccttgg atggtatact gtaaattcag
601 catatggaga taccattatc ataccttgcc gacttgacgt acctcagaat ctcatgtttg
661 gcaaatggaa atatgaaaag cccgatggct ccccagtatt tattgccttc agatcctcta
721 caaagaaaag tgtgcagtac gacgatgtac cagaatacaa agacagattg aacctctcag
781 aaaactacac tttgtctatc agtaatgcaa ggatcagtga tgaaaagaga tttgtgtgca
841 tgctagtaac tgaggacaac gtgtttgagg cacctacaat agtcaaggtg ttcagtaagt
901 agtctgcagc agtgtcactg ctaagtggga ttgatggcca gtaccagacc atgttcttta
961 gaaagaagac tgaactctct gtagtgtctc tatagcaggt atctatataa ggggacttaa
1021 agagatcttc attctgctca tatatactat cagcaaagaa aacaaagagt atgaaattca
1081 aataggagat ttgcagtgag gaactaaaat aatattctct gttactttgt catgtaaaaa
1141 tgtcgtgagc tatgaagtac tactactgat aactagcagg tgatcttaat ttttactgac
1201 atgtacaaat aagtgttgtg tgatacatac atagatatat gatatatatg taatcatgta
1261 tatcacgcat acatatacat gtatttggct gaaccaaatg aaattgccat tttgctgcat
1321 aataaaaaaa tataagcaaa aaaaaaaaaa aaa
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