LOCUS BC057396 5219 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SH3-domain binding protein 4, mRNA (cDNA clone
MGC:60352 IMAGE:6138465), complete cds.
ACCESSION BC057396
VERSION BC057396.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5219)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5219)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: j Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657561.
FEATURES Location/Qualifiers
source 1..5219
/db_xref="H-InvDB:HIT000259695"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60352 IMAGE:6138465"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..5219
/gene="SH3BP4"
/gene_synonym="BOG25"
/gene_synonym="TTP"
/db_xref="GeneID:23677"
/db_xref="HGNC:HGNC:10826"
/db_xref="MIM:605611"
CDS 405..3296
/gene="SH3BP4"
/gene_synonym="BOG25"
/gene_synonym="TTP"
/codon_start=1
/product="SH3-domain binding protein 4"
/protein_id="AAH57396.1"
/db_xref="GeneID:23677"
/db_xref="HGNC:HGNC:10826"
/db_xref="MIM:605611"
/translation="MAAQRIRAANSNGLPRCKSEGTLIDLSEGFSETSFNDIKVPSPS
ALLVDNPTPFGNAKEVIAIKDYCPTNFTTLKFSKGDHLYVLDTSGGEWWYAHNTTEMG
YIPSSYVQPLNYRNSTLSDSGMIDNLPDSPDEVAKELELLGGWTDDKKVPGRMYSNNP
FWNGVQTNPFLNGNVPVMPSLDELNPKSTVDLLLFDAGTSSFTESSSATTNSTGNIFD
ELPVTNGLHAEPPVRRDNPFFRSKRSYSLSELSVLQAKSDAPTSSSFFTGLKSPAPEQ
FQSREDFRTAWLNHRKLARSCHDLDLLGQSPGWGQTQAVETNIVCKLDSSGGAVQLPD
TSISIHVPEGHVAPGETQQISMKALLDPPLELNSDRSCSISPVLEVKLSNLEVKTSII
LEMKVSAEIKNDLFSKSTVGLQCLRSDSKEGPYVSVPLNCSCGDTVQAQLHNLEPCMY
VAVVAHGPSILYPSTVWDFINKKVTVGLYGPKHIHPSFKTVVTIFGHDCAPKTLLVSE
VTRQAPNPAPVALQLWGKHQFVLSRPQDLKVCMFSNMTNYEVKASEQAKVVRGFQLKL
GKVSRLIFPITSQNPNELSDFTLRVQVKDDQEAILTQFCVQTPQPPPKSAIKPSGQRR
FLKKNEVGKIILSPFATTTKYPTFQDRPVSSLKFGKLLKTVVRQNKNHYLLEYKKGDG
IALLSEERVRLRGQLWTKEWYIGYYQGRVGLVHTKNVLVVGRARPSLCSGPELSTSVL
LEQILRPCKFLTYIYASVRTLLMENISSWRSFADALGYVNLPLTFFCRAELDSEPERV
ASVLEKLKEDCNNTENKERKSFQKELVMALLKMDCQGLVVRLIQDFVLLTTAVEVAQR
WRELAEKLAKVSKQQMDAYESPHRDRNGVVDSEAMWKPAYDFLLTWSHQIGDSYRDVI
QELHLGLDKMKNPITKRWKHLTGTLILVNSLDVLRAAAFSPADQDDFVI"
BASE COUNT 1321 a 1424 c 1344 g 1130 t
ORIGIN
1 cgcccaggcg cgggaccacc ctccgcccgc cgaggcgggg gcccagcgcg cccggcactc
61 tcggcggtcc gggcccctcg ccactaccgc cgccgccgcc gccgtgagtc ccgcggagcc
121 gcgcgcgccc ccggctgggc cgagccgctg gccgacgagc ggagcctcag gagccggcgg
181 ggacgccatg cgagccagcg tctcccttct ctcctggaca gaaggccgtg tcctgggact
241 tctctgatgg cgagaggctg cggctgtacc aggaagaaac atattgccga gtggatgccg
301 ccgcgcagcg tgtttgcttg aggcagaagc ttcagcatct gctgggataa ctggaggaag
361 aaatatgaag ccttagcggc tttacccggg aagcgagttt cgagatggcg gctcagcgga
421 tccgagcggc caactccaat ggcctccctc gctgcaagtc agaggggacc ctgattgacc
481 tgagcgaagg gttttcagag acgagcttta atgacatcaa agtgccttct cccagtgcct
541 tgctcgtaga caaccccaca cctttcggaa atgcaaagga agtgattgcg atcaaggact
601 attgccccac caacttcacc acactgaagt tctccaaggg cgaccatctc tacgtcttgg
661 acacatctgg cggtgagtgg tggtacgcac acaacaccac cgaaatgggc tacatcccct
721 cctcctatgt gcagcccttg aactaccgga actcaacact gagtgacagc ggtatgattg
781 ataatcttcc agacagccca gacgaggtag ccaaggagct ggagctgctc gggggatgga
841 cagatgacaa aaaagtacca ggcagaatgt acagtaataa ccctttctgg aatggggtcc
901 agaccaatcc atttctgaat gggaacgtgc ccgtcatgcc cagcctggat gagctgaatc
961 ccaaaagtac tgtggatttg ctcctttttg acgcaggtac atcctccttc accgaatcca
1021 gctcagccac cacgaatagc actggcaaca tcttcgatga gcttccagtc acaaacggac
1081 tccacgcaga gccgccggtc aggcgggaca accccttctt cagaagcaag cgctcctaca
1141 gtctctcgga actctccgtc ctccaagcca agtccgatgc tcccacatcg tcgagtttct
1201 tcaccggctt gaaatcacct gcccccgagc aatttcagag ccgggaggat tttcgaactg
1261 cctggctaaa ccacaggaag ctggcccggt cttgccacga cctggacttg cttggccaaa
1321 gccctggttg gggccagacc caagccgtgg agacaaacat cgtgtgcaag ctggatagct
1381 ccgggggtgc tgtccagctt cctgacacca gcatcagcat ccacgtgccc gagggccacg
1441 tcgcccctgg ggagacccag cagatctcca tgaaagccct gctggacccc ccgctggagc
1501 tcaacagtga caggtcctgc agcatcagcc ctgtgctgga ggtcaagctg agcaacctgg
1561 aggtgaaaac ctctatcatc ttggagatga aagtgtcagc cgagataaaa aatgaccttt
1621 ttagcaaaag cacagtgggc ctccagtgcc tgaggagcga ctcgaaggaa gggccatatg
1681 tctccgtccc gctcaactgc agctgtgggg acacggtcca ggcacagctg cacaacctgg
1741 agccctgtat gtacgtggct gtcgtggccc atggcccaag catcctctac ccttccaccg
1801 tgtgggactt catcaataaa aaagtcacag tgggtctcta cggccctaaa cacatccacc
1861 catccttcaa gacggtagtg accatttttg ggcatgactg tgccccaaag acgctcctgg
1921 tcagcgaggt cacacgccag gcacccaacc ctgccccggt ggccctgcag ctgtggggga
1981 agcaccagtt cgttttgtcc aggccccagg atctcaaggt ctgtatgttt tccaatatga
2041 cgaattacga ggtcaaagcc agcgagcagg ccaaagtggt gcgaggattc cagctgaagc
2101 tgggcaaggt gagccgcctg atcttcccca tcacctccca gaaccccaac gagctctctg
2161 acttcacgct gcgggttcag gtgaaggacg accaggaggc catcctcacc cagttttgtg
2221 tccagactcc tcagccaccc cctaaaagtg ccatcaagcc ttccgggcaa aggaggtttc
2281 tcaagaagaa cgaagtcggg aaaatcatcc tgtccccgtt tgccaccact acaaagtacc
2341 cgactttcca ggaccgcccg gtgtccagcc tcaagtttgg taagttgctc aagactgtgg
2401 tgcggcagaa caagaaccac tacctgctgg agtacaagaa gggcgacggg atcgccctgc
2461 tcagcgagga gcgggtcagg ctccggggcc agctgtggac caaggagtgg tacatcggct
2521 actaccaggg cagggtgggc ctcgtgcaca ccaagaacgt gctggtggtc ggcagggccc
2581 ggcccagcct gtgctcgggc cccgagctga gcacctcggt gctgctggag cagatcctgc
2641 ggccctgcaa attcctcacg tacatctatg cctccgtgag gaccctgctc atggagaaca
2701 tcagcagctg gcgctccttc gctgacgccc tgggctacgt gaacctgccg ctcacctttt
2761 tctgccgggc agagctggat agtgagcccg agcgggtggc gtccgtccta gaaaagctga
2821 aggaggactg taacaacact gagaacaaag aacggaagtc cttccagaag gagcttgtga
2881 tggccctact gaagatggac tgccagggcc tggtggtcag actcatccag gactttgtgc
2941 tcctgaccac ggctgtagag gtggcccagc gctggcggga gctggctgag aagctggcca
3001 aggtctccaa gcagcagatg gacgcctacg agtctcccca ccgggacagg aacggggttg
3061 tggacagcga ggccatgtgg aagcctgcgt atgacttctt actcacctgg agccatcaga
3121 tcggggacag ctaccgggat gtcatccagg agctgcacct gggcctggac aagatgaaaa
3181 accccatcac caagcgctgg aagcacctca ctgggactct gatcttggtg aactccctgg
3241 acgttctgag agcagccgcc ttcagccctg cggaccagga cgacttcgtg atttgaatgg
3301 gtcccctccc ctcctgctgc tctggagtgc aagccctctt ctgccctgcg tgccctgctg
3361 tcaccgcgga gctgaagagg gaggaagggg cggctgctca gacagattta gggcccgcca
3421 gctaggctac acccatcatg cgccgccctc ctccatcgag ggagaggcct gaagggactg
3481 cctactgcag ctcgttgcca atcacatagc tttctatttg ttaagtataa atttaaattt
3541 aaaatcactt ttttaacgaa tggggggaag ggatctatga gaaaggtggt atctaatttt
3601 tttatggacc ataaaggttt aaaagaaaat aggggcacag gctgttgagg tttttatgtt
3661 gttatagacc tttttaaatt atgttagaga tgtatatagg tatttaaagg tcactgggag
3721 cgtttctgat tcccggccac actttgcatt tcaacactca gcccggaaag atgctcgttc
3781 ggttgttgga cctctttcac tccctgcgtg taagaaggtg aatcacgtgg gaaaaagtgg
3841 cttttcagta aacgggtaca gctcattctt tctgagaagg ccccaggtcc tgctccctcc
3901 tcggatttga ttgtcttccg tgctttgcct cactcgtagt aaatgaccat ccatagaata
3961 tgtgaatctt tggtgagctt cagtgggcag agtgaagtcc cgcattagca tttaggtgcc
4021 ctgagctgtt tctgccaata gattagaaag cagccatgag ttgacagtct ttagggcccc
4081 tgccagtgtg caattagtca ttgacaagaa caatgccatt tgagagtgag gtggtccctg
4141 ctgctacgag gccattgtac tgttttttcc ttgaggtcaa agcagtgctt cccatagagt
4201 ttgctgcctc ttctgtggac aggaagaaaa cttcatgacc gaatcagagc cttggtggcc
4261 actgactctc gtgcttattg cagatgctgt ggttggcctc acaagcaacg ccttatgctg
4321 atgtgcagag gtgccagctg ccatttgcca aactctgcat ttcatttcat ctaaggctta
4381 acccctcttc cttcctggtg tacctgtgtc tcctcggaag gaagtcatag tttagatgaa
4441 accatttttt gtacaatgta aagatcatct gagcaagatg agcattttgt aaaaatgaaa
4501 atgtgactca cataaaatca ggaacttgac acagtgttgc attaataact ttagggtgca
4561 gacatgctgt gtgaatctca caatgcgtcg tagatgtcgc gtgttggaag ggagcaggag
4621 gaaggactga tactggcaaa tcagtagagt gaggtgatcc ttagcaacgt gccaggacac
4681 ttcctgtgtg cctgcagttg tcagggacca tttgggatcc cgaatctcat tctctaaaac
4741 tgctttcttg aaacatgtta cttccttagt ataatcaatg tatactccct tactggcctg
4801 aaacgttgta tagctactta ttcagatact gaagaccaac ggactgaaaa aaagaacaaa
4861 cattagctat tttatgctgc aagaaccagg acacacaatt cgccaatcat cccaccatat
4921 aaccttcgat tgtgcttctc aactccaccc cataatttct cccagagacc atctatcacc
4981 ttttccccaa agaagaaaca aaaccagttg caccttaaac catggatatt ttttcctcag
5041 gggctttaaa tagtttccta tgcaacgtgt cttgtagcac aaataaaatt ctacaaaagt
5101 tgcagtaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
5161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//