LOCUS BC056862 1741 bp mRNA linear HUM 05-NOV-2003
DEFINITION Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
IMAGE:3904576), partial cds.
ACCESSION BC056862
VERSION BC056862.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1741)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1741)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: a Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22538460.
FEATURES Location/Qualifiers
source 1..1741
/db_xref="H-InvDB:HIT000259587"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3904576"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1741
/gene="NCOR1"
/gene_synonym="hCIT529I10"
/gene_synonym="hN-CoR"
/gene_synonym="KIAA1047"
/gene_synonym="N-CoR"
/gene_synonym="TRAC1"
/db_xref="GeneID:9611"
/db_xref="MIM:600849"
CDS 186..>1741
/gene="NCOR1"
/gene_synonym="hCIT529I10"
/gene_synonym="hN-CoR"
/gene_synonym="KIAA1047"
/gene_synonym="N-CoR"
/gene_synonym="TRAC1"
/codon_start=1
/product="NCOR1 protein"
/protein_id="AAH56862.1"
/db_xref="GeneID:9611"
/db_xref="MIM:600849"
/translation="MSSSGYPPNQGAFSTEQSRYPPHSVQYTFPNTRHQQEFAVPDYR
SSHLEVSQASQLLQQQQQQQLRRRPSLLSEFHPGSDRPQERRTSYEPFHPGPSPVDHD
SLESKRPRLEQVSDSHFQRVSAAVLPLVHPLPEGLRASADAKKDPAFGGKHEAPSSPI
SGQPCGDDQNASPSKLSKEELIQSMDRVDREIAKVEQQILKLKKKQQQLEEEAAKPPE
PEKPVSPPPVEQKHRSIVQIIYDENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVYH
ENIKTNQVMRKKLILFFKRRNHARKQREQKICQRYDQLMEAWEKKVDRIENNPRRKAK
ESKTREYYEKQFPEIRKQREQQERFQRVGQRGAGLSATIARSEHEISEIIDGLSEQEN
NEKQMRQLSVIPPMMFDAEQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKD
KFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRNYGKRRGRNQQIARP
SQEEKVKKKK"
misc_feature 1497..1634
/gene="NCOR1"
/gene_synonym="hCIT529I10"
/gene_synonym="hN-CoR"
/gene_synonym="KIAA1047"
/gene_synonym="N-CoR"
/gene_synonym="TRAC1"
/note="SANT; Region: SANT SWI3, ADA2, N-CoR and TFIIIB''
DNA-binding domains"
/db_xref="CDD:smart00717"
BASE COUNT 564 a 379 c 405 g 393 t
ORIGIN
1 gtgagcgtcc gactcgccgc gccgaacgag gtcccggtgt agggccgcgc gccgtggccg
61 cgtcccactc ctcaggccgg ggcgcacgtc ggctcccacg cttagccagc tcccggtggt
121 ttcctagaaa catgattgtt tattggcatt gatctcacag tctggtgagg acttctttac
181 tgataatgtc aagttcaggt tatcctccca accaaggagc attcagcaca gaacaaagtc
241 gttatcctcc tcactctgtc cagtatacat ttcccaacac ccgccaccag caggagttcg
301 cagtccctga ttatcgttcc tctcatcttg aagtgagtca ggcatcacag cttttgcagc
361 aacagcagca gcaacagctt cgaaggcgac cttccttgct ttcagaattt cacccaggtt
421 ctgacaggcc tcaagaaagg agaactagtt atgaaccgtt tcatccaggc ccatccccag
481 tggatcatga ttcactggaa tcgaagcgac cacgtctgga acaggtttct gattctcatt
541 ttcagcgtgt cagtgctgcg gttttgcctt tagtgcaccc gctgccagaa gggctgaggg
601 cttctgcaga tgctaagaag gatccagcat tcggaggcaa acatgaagct ccatcctctc
661 caatttcggg gcaaccatgt ggagatgatc aaaatgcttc accttcaaaa ctctcaaagg
721 aagagttaat acagagtatg gatcgtgtag atcgagaaat tgcaaaagta gaacagcaga
781 tccttaaact gaaaaagaaa caacaacagc ttgaagaaga ggcagctaaa cctcctgagc
841 ctgagaagcc cgtgtcccct cctcctgtgg agcagaaaca ccgcagtatt gtccaaatta
901 tttatgatga gaatcggaaa aaagcagaag aagctcataa aatttttgaa ggtcttggcc
961 caaaagttga actgccactg tataaccagc catcagatac caaggtgtac catgagaaca
1021 tcaagacaaa ccaggtgatg aggaaaaaac tcattttatt ttttaaaaga agaaatcatg
1081 caagaaaaca aagggaacaa aaaatctgcc agcgttatga tcagctcatg gaggcatggg
1141 agaaaaaagt ggacagaata gaaaataatc ctcggaggaa agctaaagaa agcaaaacaa
1201 gggaatacta tgaaaagcag tttccagaaa ttcgaaaaca aagagaacag caagaaagat
1261 ttcagcgagt tgggcagagg ggagctggtc tttcagccac cattgctagg agtgagcatg
1321 agatttctga aattattgat gggctctctg agcaggagaa taatgagaaa caaatgcggc
1381 agctctctgt gattccacct atgatgtttg atgcagaaca aagacgagtc aagttcatta
1441 acatgaatgg gcttatggag gaccctatga aagtgtataa agataggcag tttatgaatg
1501 tttggactga ccatgaaaag gagatcttta aggacaagtt tatccagcat ccaaaaaact
1561 ttggactaat tgcatcatac ttggagagga agagtgttcc tgattgtgtt ttgtattact
1621 atttaaccaa gaaaaatgag aattataaag ccctcgtcag aaggaattat gggaaacgca
1681 gaggcagaaa ccagcaaatt gctcgaccct cgcaagaaga aaaagtaaaa aaaaaaaaaa
1741 a
//