LOCUS BC056402 2004 bp mRNA linear HUM 29-JUL-2008
DEFINITION Homo sapiens chromosome 11 open reading frame 84, mRNA (cDNA clone
MGC:50858 IMAGE:5764461), complete cds.
ACCESSION BC056402
VERSION BC056402.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2004)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2004)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: i Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39930522.
FEATURES Location/Qualifiers
source 1..2004
/db_xref="H-InvDB:HIT000054160"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50858 IMAGE:5764461"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2004
/gene="C11orf84"
/db_xref="GeneID:144097"
/db_xref="HGNC:HGNC:25115"
CDS 237..1382
/gene="C11orf84"
/codon_start=1
/product="chromosome 11 open reading frame 84"
/protein_id="AAH56402.1"
/db_xref="GeneID:144097"
/db_xref="HGNC:HGNC:25115"
/translation="MALKAEGAALDCFEVTLKCEEGEDEEEAMVVAVIPRPEPMLRVT
QQEKTPPPRPSPLEAGSDGCEEPKQQVSWEQEFLVGSSPGGSGRALCMVCGAEIRAPS
ADTARSHILEQHPHTLDLSPSEKSNILEAWSEGVALLQDVRAEQPSPPNSDSGQDAHP
DPDANPDAARMPAEIVVLLDSEDNPSLPKRSRPRGLRPLELPAVPATEPGNKKPRGQR
WKEPPGEEPVRKKRGRPMTKNLDPDPEPPSPDSPTETFAAPAEVRHFTDGSFPAGFVL
QLFSHTQLRGPDSKDSPKDREVAEGGLPRAESPSPAPPPGLRGTLDLQVIRVRMEEPP
AVSLLQDWSRHPQGTKRVGAGDTSDWPTVLSESSTTVAGKPEKGNGV"
BASE COUNT 433 a 639 c 607 g 325 t
ORIGIN
1 gccccggatt gagccctccc cgcccgggct cccgacgcgc cgaggtctcg gggaggcccg
61 gacgcgccgg tcgcaggccc ggccggcgag cggcgggcgg gcggcgggga gggggctgcg
121 cggggcgggc ggcgggcccg gcgctattcc ggccaggagg cgggaggcgg ttgccggctg
181 cgcgccgaag cctgcgcgcc agtcctccgg ccactgctat cgcccacggc cgcaccatgg
241 ccctaaaggc cgagggcgcc gcactcgact gcttcgaggt gacgctgaaa tgcgaggaag
301 gggaggacga ggaggaggcc atggtggtgg ccgtaattcc gcggcccgag ccgatgctca
361 gagtgaccca acaggagaag accccaccgc ctagacccag cccgctagag gcaggcagtg
421 atggctgtga ggagccgaag cagcaggtgt cttgggagca ggagttcctg gtgggcagca
481 gcccaggagg cagcgggcgg gcactgtgca tggtgtgtgg cgctgagatc cgggcaccct
541 cggccgacac agctcgctcg cacatcttgg agcagcaccc tcacaccttg gacctgagcc
601 cttctgagaa gagcaatatc ctggaggcct ggagtgaagg ggtggccctc ttgcaagacg
661 tgagagctga gcagccgtcc ccacccaact cagactcggg ccaggatgcc cacccagacc
721 cagacgccaa cccagacgct gccagaatgc cagccgaaat cgtcgttctc cttgactctg
781 aggataaccc atccctccct aaaaggagca ggcccagggg actccgcccc ctcgagcttc
841 ctgctgtccc tgccacagag ccaggaaata agaagccccg tggtcagaga tggaaggaac
901 ccccagggga agagccagtc agaaagaaaa gaggcagacc tatgaccaaa aacctggacc
961 ctgacccaga gcccccatcg ccagactcgc ccacggagac tttcgcagca ccagccgagg
1021 tccgacactt cactgacggc agcttccccg ccggcttcgt cttgcagctc ttctcccaca
1081 cccagctcag gggcccagac agcaaggact cacccaaaga cagggaagtg gcagaaggag
1141 gccttccccg ggcggagagc ccctctccag ctccccctcc ggggctccgc gggacactgg
1201 atctccaggt tatccgcgtg cggatggagg agcccccagc ggtcagcctc ctgcaagact
1261 ggtccaggca cccccagggc accaagcgtg tgggagcagg tgacacctca gactggccca
1321 cagttctgtc agaatccagc accactgtgg cagggaagcc ggaaaaaggg aatggagtgt
1381 aaattcttgc tttcctgggg agggagggag ggatgaggca gcgtccccca gtggcttata
1441 actcagagct gcctggctca cccacctggt ggagagagta gaaacaggtg ccagggcagg
1501 agggggctgg ggcagcatcc actgttattt cggggcactg gaaagtgtct gttcctggcc
1561 aggcctgagg tcggcgaggg tggctgaggc tgttgtgcag tagggcactg ggcctgtgga
1621 gaacacctac cccagtcctt cgctgacccc cacctctgtt tgtcccccat gacctcctcc
1681 caccctcccc ctgctcccca ccattctccc ttggcacagt gccttacaca agagtggtca
1741 taagggggtt tgaactgagt cccactacct cgggggacac ctctcctccc cacttgttca
1801 ggcttctaaa ccaggaggcc tccattacct cttcctgtcc caaccctgca gaggcctgaa
1861 gctgggcctg ggcaccccat tcactcccgt tctcatttac atctgttttc ctgttgtata
1921 tatcaccttt gttgacaata aattattttt ttttattaag aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa aaaaaaaaaa aaaa
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