LOCUS BC056246 1450 bp mRNA linear HUM 28-JUL-2005 DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3), mRNA (cDNA clone IMAGE:4070910), complete cds. ACCESSION BC056246 VERSION BC056246.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1450) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1450) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-AUG-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 48 Row: a Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 9945386 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1450 /db_xref="H-InvDB:HIT000054144" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4070910" /tissue_type="Lung" /clone_lib="NIH_MGC_77" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1450 /gene="GALNT3" /gene_synonym="GalNAc-T3" /db_xref="GeneID:2591" /db_xref="MIM:601756" CDS 448..873 /gene="GALNT3" /gene_synonym="GalNAc-T3" /codon_start=1 /product="GALNT3 protein" /protein_id="AAH56246.1" /db_xref="GeneID:2591" /db_xref="MIM:601756" /translation="MERNMKNKNKMLDLMLEAVNNIKDAMPKMQIGAPVRQNIDAGER PCLQGYYTAAELKPVLDRPPQDSNAPGASGKAFKTTNLSVEEQKEKERGEAKHCFNAF ASDRISLHRDLGPDTRPPEYVEEYLLFILYHQALQGREG" BASE COUNT 461 a 270 c 318 g 401 t ORIGIN 1 ggggaggcaa cgcgggaggc ccagcgggaa ggcaggaggc ggcggcggag gaggagctct 61 actgagccgc aactgtggcg acagcaaccg gagtcgcagc cgccgccacc tgcacctggc 121 gcctagccca cgtccagcgc ctgcccggcc gccgcttccc gccaccctgc cctgcccacc 181 cgccaggtac taccattaaa gataccttct tctcagcaaa tctatgataa aaaatataag 241 taacagaaga agaaataact gttatttgtc aagtgacaag cttttaatgt cagaatggct 301 cacctaaagc gactagtaaa attacacatt aaaagacatt accataaaaa gttctggaag 361 cttggtgcag taattttttt ctttataata gttttggttt taatgcaaag agaagtaagt 421 gttcaatatt ccaaagagga atcaaggatg gaaaggaaca tgaaaaacaa aaacaagatg 481 ttggatttaa tgctagaagc tgtaaacaat attaaggatg ccatgccaaa aatgcaaata 541 ggagcacctg tcaggcaaaa cattgatgct ggtgagagac cttgtttgca aggatattat 601 acagcagcag aattgaagcc tgtccttgac cgtccacctc aggattcaaa tgcacctggt 661 gcttctggta aagcattcaa gacaaccaat ttaagtgttg aagagcaaaa ggaaaaggaa 721 cgtggggaag ctaaacactg ctttaatgct ttcgcaagtg acaggatttc tttgcaccga 781 gatcttggac cagacactcg acctcctgag tatgttgaag aatatttatt gtttattctt 841 tatcaccagg ctttgcaggg gagagagggg tgagctaagg aagttatctg ttttttagct 901 actctaaggc agaaaatcag caaatactgt ttatttaacc tgttgtattt attttttgct 961 tataatgatt gaggctacat atccctattt atgcttggtg aggcagtgca gatatgaaaa 1021 gttattagct tggaaattag aaaactgaat tctagatctg actgctatcc acaaggaaat 1081 tctttattcc taaatactgt ggttttctca tctatttagg gggaattatt ggacaatttg 1141 tataggaagt agaaggtaga ggaattgttt ccatttctct gtatttcttt agaataaaaa 1201 tgtttaaaaa catgccaaga ttttggaact gttggataat attttatata tgtgtaaagc 1261 aattcacaga ctttgtgatt actttgactc aaagtttttg agtacctaat tatatttcag 1321 aatgccctat ttttttgtaa tcccagcatt ttgggaggct gaggcctgca aatagcttga 1381 gttcaggagt tccagaccag cctgggcaac atgatgaaac cccgtctcaa aaaaaaaaaa 1441 aaaaaaaaaa //