LOCUS BC056246 1450 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 3 (GalNAc-T3), mRNA (cDNA clone
IMAGE:4070910), complete cds.
ACCESSION BC056246
VERSION BC056246.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1450)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1450)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 48 Row: a Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9945386
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1450
/db_xref="H-InvDB:HIT000054144"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4070910"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1450
/gene="GALNT3"
/gene_synonym="GalNAc-T3"
/db_xref="GeneID:2591"
/db_xref="MIM:601756"
CDS 448..873
/gene="GALNT3"
/gene_synonym="GalNAc-T3"
/codon_start=1
/product="GALNT3 protein"
/protein_id="AAH56246.1"
/db_xref="GeneID:2591"
/db_xref="MIM:601756"
/translation="MERNMKNKNKMLDLMLEAVNNIKDAMPKMQIGAPVRQNIDAGER
PCLQGYYTAAELKPVLDRPPQDSNAPGASGKAFKTTNLSVEEQKEKERGEAKHCFNAF
ASDRISLHRDLGPDTRPPEYVEEYLLFILYHQALQGREG"
BASE COUNT 461 a 270 c 318 g 401 t
ORIGIN
1 ggggaggcaa cgcgggaggc ccagcgggaa ggcaggaggc ggcggcggag gaggagctct
61 actgagccgc aactgtggcg acagcaaccg gagtcgcagc cgccgccacc tgcacctggc
121 gcctagccca cgtccagcgc ctgcccggcc gccgcttccc gccaccctgc cctgcccacc
181 cgccaggtac taccattaaa gataccttct tctcagcaaa tctatgataa aaaatataag
241 taacagaaga agaaataact gttatttgtc aagtgacaag cttttaatgt cagaatggct
301 cacctaaagc gactagtaaa attacacatt aaaagacatt accataaaaa gttctggaag
361 cttggtgcag taattttttt ctttataata gttttggttt taatgcaaag agaagtaagt
421 gttcaatatt ccaaagagga atcaaggatg gaaaggaaca tgaaaaacaa aaacaagatg
481 ttggatttaa tgctagaagc tgtaaacaat attaaggatg ccatgccaaa aatgcaaata
541 ggagcacctg tcaggcaaaa cattgatgct ggtgagagac cttgtttgca aggatattat
601 acagcagcag aattgaagcc tgtccttgac cgtccacctc aggattcaaa tgcacctggt
661 gcttctggta aagcattcaa gacaaccaat ttaagtgttg aagagcaaaa ggaaaaggaa
721 cgtggggaag ctaaacactg ctttaatgct ttcgcaagtg acaggatttc tttgcaccga
781 gatcttggac cagacactcg acctcctgag tatgttgaag aatatttatt gtttattctt
841 tatcaccagg ctttgcaggg gagagagggg tgagctaagg aagttatctg ttttttagct
901 actctaaggc agaaaatcag caaatactgt ttatttaacc tgttgtattt attttttgct
961 tataatgatt gaggctacat atccctattt atgcttggtg aggcagtgca gatatgaaaa
1021 gttattagct tggaaattag aaaactgaat tctagatctg actgctatcc acaaggaaat
1081 tctttattcc taaatactgt ggttttctca tctatttagg gggaattatt ggacaatttg
1141 tataggaagt agaaggtaga ggaattgttt ccatttctct gtatttcttt agaataaaaa
1201 tgtttaaaaa catgccaaga ttttggaact gttggataat attttatata tgtgtaaagc
1261 aattcacaga ctttgtgatt actttgactc aaagtttttg agtacctaat tatatttcag
1321 aatgccctat ttttttgtaa tcccagcatt ttgggaggct gaggcctgca aatagcttga
1381 gttcaggagt tccagaccag cctgggcaac atgatgaaac cccgtctcaa aaaaaaaaaa
1441 aaaaaaaaaa
//