LOCUS BC056240 645 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens small proline-rich protein 1B (cornifin), mRNA (cDNA
clone IMAGE:6494770), complete cds.
ACCESSION BC056240
VERSION BC056240.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 645)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 645)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: NCI
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 48 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4507186
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..645
/db_xref="H-InvDB:HIT000054142"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6494770"
/tissue_type="Pooled, 40 cell lines"
/clone_lib="NIH_MGC_142"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..645
/gene="SPRR1B"
/gene_synonym="CORNIFIN"
/gene_synonym="GADD33"
/db_xref="GeneID:6699"
/db_xref="HGNC:HGNC:11260"
/db_xref="MIM:182266"
CDS 69..338
/gene="SPRR1B"
/gene_synonym="CORNIFIN"
/gene_synonym="GADD33"
/codon_start=1
/product="small proline-rich protein 1B (cornifin)"
/protein_id="AAH56240.1"
/db_xref="GeneID:6699"
/db_xref="HGNC:HGNC:11260"
/db_xref="MIM:182266"
/translation="MSSQQQKQPCIPPPQLQQQQVKQPCQPPPQEPCIPKTKEPCHPK
VPEPCHPKVPEPCQPKVPEPCHPKVPEPCPSIVTPAPAQQKTKQK"
BASE COUNT 186 a 205 c 124 g 130 t
ORIGIN
1 ggggaccagt tctaagggac catacagagt attcctctct tcacaccagg accagccact
61 gttgcagcat gagttcccag cagcagaagc agccctgcat cccaccccct cagcttcagc
121 agcagcaggt gaaacagcct tgccagcctc cacctcagga accatgcatc cccaaaacca
181 aggagccctg ccaccccaag gtgcctgagc cctgccaccc caaagtgcct gagccctgcc
241 agcccaaggt tccagagcca tgccacccca aggtgcctga gccctgccct tcaatagtca
301 ctccagcacc agcccagcag aagaccaagc agaagtaatg tggtccacag ccatgccctt
361 gaggagccgg ccaccagatg ctgaatcccc tatcccattc tgtgtatgag tcccatttgc
421 cttgcaatta gcattctgtc tcccccaaaa aagaatgtgc tatgaagctt tctttcctac
481 acactctgag tctctgaatg aagctgaagg tcttagtacc agagctagtt ttcagctgct
541 cagaattcat ctgaagagag acttaagatg aaagcaaatg attcagctcc cttatacccc
601 cattaaattc actttcaatt ccaaaaaaaa aaaaaaaaaa aaaaa
//