LOCUS BC055285 5385 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens AT-hook transcription factor, mRNA (cDNA clone
MGC:61702 IMAGE:6143155), complete cds.
ACCESSION BC055285
VERSION BC055285.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5385)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5385)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-JUL-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: k Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37620170.
FEATURES Location/Qualifiers
source 1..5385
/db_xref="H-InvDB:HIT000054112"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61702 IMAGE:6143155"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..5385
/gene="AKNA"
/gene_synonym="KIAA1968"
/gene_synonym="RP11-82I1.4"
/db_xref="GeneID:80709"
/db_xref="HGNC:HGNC:24108"
/db_xref="MIM:605729"
CDS 163..4482
/gene="AKNA"
/gene_synonym="KIAA1968"
/gene_synonym="RP11-82I1.4"
/codon_start=1
/product="AT-hook transcription factor"
/protein_id="AAH55285.1"
/db_xref="GeneID:80709"
/db_xref="HGNC:HGNC:24108"
/db_xref="MIM:605729"
/translation="MASSETEIRWAEPGLGKGPQRRRWAWAEDKRDVDRSSSQSWEEE
RLFPNATSPELLEDFRLAQQHLPPLEWDPHPQPDGHQDSESGETSGEEAEAEDVDSPA
SSHEPLAWLPQQGRQLDMTEEEPDGTLGSLEVEEAGESSSRLGYEAGLSLEGHGNTSP
MALGHGQARGWVASGEQASGDKLSEHSEVNPSVELSPARSWSSGTVSLDHPSDSLDST
WEGETDGPQPTALAETLPEGPSHHLLSPDGRTGGSVARATPMEFQDSSAPPAQSPQHA
TDRWRRETTRFFCPQPKEHIWKQTKTSPKPLPSRFIGSISPLNPQPRPTRQGRPLPRQ
GATLAGRSSSNAPKYGRGQLNYPLPDFSKVGPRVRFPKDESYRPPKSRSHNRKPQAPA
RPLIFKSPAEIVQEVLLSSGEAALAKDTPPAHPITRVPQEFQTPEQATELVHQLQEDY
HRLLTKYAEAENTIDQLRLGAKVNLFSDPPQPNHSIHTGMVPQGTKVLSFTIPQPRSA
EWWPGPAEDPQASAASGWPSARGDLSPSSLTSMPTLGWLPENRDISEDQSSAEQTQAL
ASQASQFLAKVESFERLIQAGRLMPQDQVKGFQRLKAAHAALEEEYLKACREQHPAQP
LAGSKGTPGRFDPRRELEAEIYRLGSCLEELKEHIDQTQQEPEPPGSDSALDSTPALP
CLHQPTHLPAPSGQAPMPAIKTSCPEPATTTAAASTGPCPLHVNVEVSSGNSEVEDRP
QDPLARLRHKELQMEQVYHGLMERYLSVKSLPEAMRMEEEEEGEEEEEEEGGGDSLEV
DGVAATPGKAEATRVLPRQCPVQAEKSHGAPLEEATEKMVSMKPPGFQASLARDGHMS
GLGKAEAAPPGPGVPPHPPGTKSAASHQSSMTSLEGSGISERLPQKPLHRGGGPHLEE
TWMASPETDSGFVGSETSRVSPLTQTPEHRLSHISTAGTLAQPFAASVPRDGASYPKA
RGSLIPRRATEPSTPRSQAQRYLSSPSGPLRQRAPNFSLERTLAAEMAVPGSEFEGHK
RISEQPLPNKTISPPPAPAPAAAPLPCGPTETIPSFLLTRAGRDQAICELQEEVSRLR
LRLEDSLHQPLQGSPTRPASAFDRPARTRGRPADSPATWGSHYGSKSTERLPGEPRGE
EQIVPPGRQRARSSSVPREVLRLSLSSESELPSLPLFSEKSKTTKDSPQAARDGKRGV
GSAGWPDRVTFRGQYTGHEYHVLSPKAVPKGNGTVSCPHCRPIRTQDAGGAVTGDPLG
PPPADTLQCPLCGQVGSPPEADGPGSATSGAEKATTRRKAPSTPSPKQRSKQAGSSPR
PPPGLWYLATAPPAPAPPAFAYISSVPIMPYPPAAVYYAPAGPTSAQPAAKWPPTASP
PPARRHRHSIQLDLGDLEELNKALSRAVQAAESVRSTTRQMRSSLSADLRQAHSLRGS
CLF"
BASE COUNT 1192 a 1742 c 1561 g 890 t
ORIGIN
1 gcaactgaag acggaggtgc ccaaggtcag aaggaagcac cacacagagg gcacaggcag
61 gatggccgat gctgacagga accagcggtg actctggggc ccctggcagc agctctgtct
121 cctgaagatg aagtggccca ggtgaagccc aggccagccc caatggccag ctcggagact
181 gagatccgct gggctgagcc tggcctgggg aagggccccc agcggcggcg ctgggcctgg
241 gccgaggaca agagggatgt ggatagaagt agttcacaaa gctgggaaga agagagactc
301 tttcccaatg ccaccagccc cgagctccta gaggacttcc gcctggccca gcagcacctg
361 ccgcccctgg agtgggaccc acacccgcag cccgatgggc atcaggattc cgagtcagga
421 gagacttcgg gagaagaggc tgaagcagag gatgtggaca gcccagcaag ttcccatgag
481 cctcttgcct ggctccccca gcagggccgt cagctggaca tgactgaaga ggagccagat
541 gggaccctcg gaagtctgga ggttgaggag gctggagaga gctcctcaag gttggggtat
601 gaggctggtc tcagcttgga aggccatgga aacaccagcc ccatggctct tgggcatggt
661 caggccaggg gctgggtggc ttctggcgaa caagccagtg gggacaaact ttctgaacat
721 tccgaggtca acccatccgt tgaactcagc ccggcaaggt cctggagcag tgggacagtg
781 agcctcgacc accctagtga cagccttgat tctacctggg aaggagagac cgatggcccc
841 cagcccactg ccctggcaga aaccttgcca gagggcccca gccaccacct cctaagccca
901 gatggcagaa ctggaggcag tgttgctcgg gcaaccccca tggaattcca ggactcctca
961 gctcccccag cccagagtcc gcagcatgcc acagatagat ggaggagaga aacgaccaga
1021 ttcttctgcc ctcagcccaa ggaacacatc tggaagcaga caaagacgtc acctaagcca
1081 ctcccttccc gattcattgg ctccatcagc cccctgaatc cccagcccag gccaacgcgg
1141 cagggcaggc cgctgcccag acagggagcc actctggctg gccgctcctc ttctaatgcc
1201 cccaagtatg gccgggggca gttgaactac ccactccctg atttctccaa ggtagggccc
1261 cgggtgagat tccccaaaga tgagagctac cgtcccccca agtccagaag ccacaacagg
1321 aagcctcagg cccctgccag gcccctcatc ttcaagtctc cagctgagat tgtgcaggag
1381 gtgctgttga gcagtggaga agcagccctg gcaaaggaca cgcctcctgc ccaccctatc
1441 accagggtac cccaagaatt tcagacgcct gagcaagcca ctgagctggt ccatcagctc
1501 caggaagact accacaggct cctcaccaag tacgctgagg ccgagaacac cattgaccag
1561 ctacgcctcg gggccaaggt gaacctgttc tctgacccac cccagcccaa ccacagcatc
1621 cacacgggaa tggtgcccca ggggaccaag gtcttgtcct tcaccatccc acagccccgc
1681 tctgcagagt ggtggccggg cccggccgag gacccccagg cctctgcggc ctcagggtgg
1741 ccatcagctc gaggagactt gagcccctcc tcgcttacca gcatgcccac cctggggtgg
1801 cttccggaga accgggacat ctctgaggac cagtcctcag cagagcagac ccaggcactg
1861 gcttctcagg ccagccagtt cctggccaag gtggagtcct ttgaaagact gatacaggca
1921 ggacgtctca tgccccagga ccaagtcaag ggcttccagc ggctgaaggc tgcccacgcg
1981 gccctagagg aggagtacct gaaggcttgt cgggagcaac accctgccca gccgcttgcc
2041 ggctccaagg ggacgcctgg aagatttgat cctcgcaggg agctggaggc agagatatac
2101 cgtctgggaa gctgcctgga agagctgaag gaacacatag accagaccca gcaagagcct
2161 gagccgcccg ggtcagactc agctctggac agcaccccag ccctgccctg cctccatcag
2221 ccaacgcacc tgcctgctcc ttctggacaa gcccccatgc cagccatcaa gacctcctgc
2281 cctgagcctg ctaccaccac tgccgccgcc agcactggcc cctgcccatt gcacgtaaat
2341 gtggaggtga gctctggcaa cagtgaggtg gaggacaggc cacaggaccc cctggcccga
2401 ctcaggcaca aggagctgca gatggagcaa gtttaccatg gcctcatgga gcggtacctc
2461 agtgtgaagt ctctcccaga agccatgaga atggaggagg aggaagaagg agaggaggag
2521 gaggaggaag aggggggagg tgactccctg gaagttgatg gggtggctgc aactccaggg
2581 aaagcagagg ccaccagggt cctcccaagg cagtgcccgg tgcaggctga gaaaagtcat
2641 ggggctcccc tggaggaggc cacggagaag atggtatcta tgaagccacc aggtttccag
2701 gcatccctgg ctagagacgg gcacatgtca ggcctgggca aggctgaggc agcccctcca
2761 ggccctggcg tgccacccca ccctccaggc accaagtccg cagcatccca ccaaagtagt
2821 atgaccagcc tggagggaag cggcatctct gagcgccttc cacagaagcc tttgcaccga
2881 ggcggtgggc cccacctgga ggagacctgg atggcgtccc cagagacaga cagtggcttt
2941 gtgggctcag aaacaagcag agtttcaccc ctcacccaga ctccagagca ccggctctcc
3001 cacatcagca cagcaggaac attagcccag ccctttgctg catctgtgcc cagggatgga
3061 gcttcctacc ccaaggccag gggttctctg attcccagaa gagccacaga gcccagcaca
3121 ccccggagcc aagcacagag gtacctctcc agcccaagtg ggcctctccg gcagagggca
3181 cccaacttca gcctggagcg gacactggca gccgagatgg cggttcctgg ctcagagttt
3241 gaggggcaca aacggatttc tgaacagccc cttcccaaca agacaatcag cccaccccca
3301 gcccccgccc ctgccgctgc gcctctaccc tgtggaccaa cagagaccat ccccagcttc
3361 ctgctcacca gggcagggcg agaccaggcc atctgtgagc tgcaagaaga ggtgtcccgg
3421 cttcgtctgc ggctggaaga cagcctgcac cagccactcc agggcagccc gacacgccca
3481 gcatctgcct ttgaccgccc cgcccggacc cgcggccggc cagcagactc cccagccacc
3541 tggggctccc attatggcag taaatccaca gagagattgc ctggtgagcc tagaggtgaa
3601 gagcagattg tccctccagg aaggcagcga gccaggtctt cctcagtgcc tcgggaggtg
3661 ctccgactgt ccctgagttc agaatctgag ctgccctccc taccactgtt ctctgagaag
3721 agcaagacca ccaaggacag tccacaggca gctcgggatg gaaagagagg ggtgggcagt
3781 gctggatggc cagacagggt caccttccgg ggccaataca caggccacga ataccatgtt
3841 ctgtccccta aggcggtccc aaaaggcaat ggcacagtct cctgtcccca ctgccggccc
3901 attaggaccc aggatgcggg tggtgctgtc acaggggacc cactgggacc gcctcccgct
3961 gatacccttc agtgtcccct gtgtggtcaa gttgggtctc ccccagaggc agatggtcca
4021 ggctcagcca cctctggggc agagaaggcc accacgagga gaaaagcacc ttcaactccc
4081 agccccaagc agaggagcaa gcaggcgggg tcgtcgccac gcccaccccc cggactgtgg
4141 tatctggcaa cagcgccccc agcaccagcc cctccagcct ttgcctacat ctcctcggtt
4201 cccatcatgc cttatccacc tgccgctgtg tactatgcgc ctgcaggacc tacctcagcc
4261 caaccagctg ccaagtggcc gcccacagcc tctcccccac cagcccggag acaccggcac
4321 tccatccagc tcgacctggg cgacctagag gagctcaaca aggccctgag ccgggccgtg
4381 caggctgccg agagcgtccg ctctaccacc aggcagatga gaagctcgct gtcagccgac
4441 ctgcgccagg ctcacagcct gcggggctcc tgcctcttct gacttcactg ggggcccaga
4501 ggcagatggg tgggtgggtg ggcaggtggc ctgccaggcc aggagtgggc tggagctgct
4561 gaggcccaga aggcccgcat agttcctcac caggagggtc tccctccagc acaggtcccg
4621 cctgctcagt ccctgtgctt tccaagtgga gggggtgtca gctcggtcac caagagaagt
4681 gacttcccag gagcaccagt cccctcacag aggtgctgtg agcgaggcct ccttcggtcc
4741 aggcagaacc tcaggcagtc tctcctggtc ctgcatgtgt gcaactccag ctaataatag
4801 gtattttata tacagatgga cagatatttt tttaaactgg ggagttttcc tgatcttggg
4861 tcctctttag ggggccagac aagaaaggcc tacggtttct ggagcaaacc tgtcccccac
4921 ctgtgaccag tcactctggg gcaagcatca ctgggaaggg catagccgga gacctttctc
4981 ctagtgactg gtagtcagtg gggcatttta ggatgtcagg gccccagggt gacatgtgtc
5041 cagcttttct atggcagcag aggcctttcc ctcagacaag ctacaaagtg cccaggatgc
5101 catccaccat ggtccccttc agtacctcac gcatggtccc cagcttctcc taggatccca
5161 gtggcattta tcagtggcca gctacctgcc aggcccgggc tggggcacgg tctgcggcca
5221 tgaggccagg ccgcctcccg cacccctacc ccgtggcagc agcatacctc tgcatttctg
5281 gaatgtgtgt gcatcaatga tgtttgtata tttgaggcat ttaaaaatct attttcgtta
5341 cgagggcaaa tgaagaatga atattgatct taaaaaaaaa aaaaa
//