LOCUS BC055093 640 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens apolipoprotein C-I, mRNA (cDNA clone MGC:62029 IMAGE:6567705), complete cds. ACCESSION BC055093 VERSION BC055093.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 640) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 640) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-JUL-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: NCI cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 48 Row: j Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..640 /db_xref="H-InvDB:HIT000054109" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:62029 IMAGE:6567705" /tissue_type="Pooled, 40 cell lines" /clone_lib="NIH_MGC_126" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..640 /gene="APOC1" /db_xref="GeneID:341" /db_xref="HGNC:HGNC:607" /db_xref="MIM:107710" CDS 252..503 /gene="APOC1" /codon_start=1 /product="apolipoprotein C-I" /protein_id="AAH55093.1" /db_xref="GeneID:341" /db_xref="HGNC:HGNC:607" /db_xref="MIM:107710" /translation="MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTL EDKARELISRIKQSELSAKMREWFSETFQKVKEKLKIDS" BASE COUNT 173 a 174 c 171 g 122 t ORIGIN 1 gggggagctc ggctcttgag acaggaatct tgcccattcc ccgaacgaat aaaccccttc 61 cttaactcag cgtctgagga attttgtctg cggctcctcc tgctacattc tgagtgggga 121 aagggactaa ggtggtctga ggaccccaca gagtcaggaa gattgagagc ctgataaagg 181 tcctgcgggc aggacaggac ctcccaacca agccctccag caaggattca gagtgcccct 241 ccggcctcgc catgaggctc ttcctgtcgc tcccggtcct ggtggtggtt ctgtcgatcg 301 tcttggaagg cccagcccca gcccagggga ccccagacgt ctccagtgcc ttggataagc 361 tgaaggagtt tggaaacaca ctggaggaca aggctcggga actcatcagc cgcatcaaac 421 agagtgaact ttctgccaag atgcgggagt ggttttcaga gacatttcag aaagtgaagg 481 agaaactcaa gattgactca tgaggacctg aagggtgaca tcccaggagg ggcctctgaa 541 atttcccaca ccccagcgcc tgtgctgagg actccctcca tgtggcccca ggtgccacca 601 ataaaaatcc tacgaaaaaa aaaaaaaaaa aaaaaaaaaa //