LOCUS BC055089 644 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cathelicidin antimicrobial peptide, mRNA (cDNA clone
MGC:61960 IMAGE:6457987), complete cds.
ACCESSION BC055089
VERSION BC055089.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 644)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 644)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: NCI
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 48 Row: i Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39753969.
FEATURES Location/Qualifiers
source 1..644
/db_xref="H-InvDB:HIT000054108"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61960 IMAGE:6457987"
/tissue_type="Pooled, 40 cell lines"
/clone_lib="NIH_MGC_142"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..644
/gene="CAMP"
/gene_synonym="CAP18"
/gene_synonym="FALL-39"
/gene_synonym="FALL39"
/gene_synonym="HSD26"
/gene_synonym="LL37"
/db_xref="GeneID:820"
/db_xref="HGNC:HGNC:1472"
/db_xref="MIM:600474"
CDS 43..555
/gene="CAMP"
/gene_synonym="CAP18"
/gene_synonym="FALL-39"
/gene_synonym="FALL39"
/gene_synonym="HSD26"
/gene_synonym="LL37"
/codon_start=1
/product="cathelicidin antimicrobial peptide"
/protein_id="AAH55089.1"
/db_xref="GeneID:820"
/db_xref="HGNC:HGNC:1472"
/db_xref="MIM:600474"
/translation="MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAID
GINQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKD
GLVKRCMGTVTLNQARGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDF
LRNLVPRTES"
BASE COUNT 177 a 153 c 186 g 128 t
ORIGIN
1 ggggaggctc ctgtgggcta gagggaggca gacatgggga ccatgaagac ccaaagggat
61 ggccactccc tggggcggtg gtcactggtg ctcctgctgc tgggcctggt gatgcctctg
121 gccatcattg cccaggtcct cagctacaag gaagctgtgc ttcgtgctat agatggcatc
181 aaccagcggt cctcggatgc taacctctac cgcctcctgg acctggaccc caggcccacg
241 atggatgggg acccagacac gccaaagcct gtgagcttca cagtgaagga gacagtgtgc
301 cccaggacga cacagcagtc accagaggat tgtgacttca agaaggacgg gctggtgaag
361 cggtgtatgg ggacagtgac cctcaaccag gccaggggct cctttgacat cagttgtgat
421 aaggataaca agagatttgc cctgctgggt gatttcttcc ggaaatctaa agagaagatt
481 ggcaaagagt ttaaaagaat tgtccagaga atcaaggatt ttttgcggaa tcttgtaccc
541 aggacagagt cctagtgtgt gccctaccct ggctcaggct tctgggctct gagaaataaa
601 ctatgagagc aattccaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//