LOCUS BC054500 4675 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D, mRNA (cDNA clone MGC:57659 IMAGE:5551182), complete cds. ACCESSION BC054500 VERSION BC054500.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4675) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4675) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUL-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 107 Row: f Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 33942063. FEATURES Location/Qualifiers source 1..4675 /db_xref="H-InvDB:HIT000054075" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:57659 IMAGE:5551182" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4675 /gene="SEMA4D" /gene_synonym="CD100" /gene_synonym="coll-4" /gene_synonym="M-sema G" /gene_synonym="M-sema-G" /db_xref="GeneID:10507" /db_xref="HGNC:HGNC:10732" /db_xref="MIM:601866" CDS 573..3161 /gene="SEMA4D" /gene_synonym="CD100" /gene_synonym="coll-4" /gene_synonym="M-sema G" /gene_synonym="M-sema-G" /codon_start=1 /product="sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D" /protein_id="AAH54500.1" /db_xref="GeneID:10507" /db_xref="HGNC:HGNC:10732" /db_xref="MIM:601866" /translation="MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHE PDIYNYSALLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGK SKQTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDP AHSYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIR KSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLK ARLICSRPDSGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAE EVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQ FVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHK AISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGT CEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFF KHGGTAELKCSQKSNLARVFWKFQNDVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQC LSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTQGSSP PTPAVQATSSGAITLPPKPAPTGTSCEPKIVINTVPQLHSEKTMYLKSSDNRLLMSLF LFFFVLFLCLFFYNCYKGYLPRQCLKFRSALLIGKKKPKSDFCDREQSLKETLVEPGS FSQQNGEHPKPALDTGYETEQDTITSKVPTDREDSQRIDDLSARDKPFDVKCELKFAD SDADGD" BASE COUNT 1124 a 1218 c 1185 g 1148 t ORIGIN 1 gctgtaacac tcaccgtgaa ggtctgcagc ttcactcccg agccagcgag accacgaacc 61 caccagaagg aagaaactct gaacacatct gaacatcaga agggacagac tccagacgcg 121 ccaccactct gctaacacca gatagtggaa agaaaccatg tgctgaaatg tttgacgaca 181 ctgatggttt gactctgcta actggaatgg cttattgtgc aagaaagtac acctggtcgg 241 gtcctggggc tcatctctag caccagcaaa gatttctgaa gacgtctttc tagaaatgac 301 tggaaagttt caagaggcat aagatacagc atttcttctg aggccctgaa gaagtatcaa 361 gtgggctttg acattgcggt ggtgagagcg acccctcctc acctggagaa ctgggaaatg 421 tggattctca gggaccgcgc tgttcacgag ctccaggctg tgctgctggc cctggtcctg 481 gggcgctgag ccgcatctgc aatagcacac ttgcccggcc acctgctgcc gtgagccttt 541 gctgctgaag cccctggggt cgcctctacc tgatgaggat gtgcaccccc attagggggc 601 tgctcatggc ccttgcagtg atgtttggga cagcgatggc atttgcaccc ataccccgga 661 tcacctggga gcacagagag gtgcacctgg tgcagtttca tgagccagac atctacaact 721 actcagcctt gctgctgagc gaggacaagg acaccttgta cataggtgcc cgggaggcgg 781 tcttcgctgt gaacgcactc aacatctccg agaagcagca tgaggtgtat tggaaggtct 841 cagaagacaa aaaagcaaaa tgtgcagaaa aggggaaatc aaaacagaca gagtgcctca 901 actacatccg ggtgctgcag ccactcagcg ccacttccct ttacgtgtgt gggaccaacg 961 cattccagcc ggcctgtgac cacctgaact taacatcctt taagtttctg gggaaaaatg 1021 aagatggcaa aggaagatgt ccctttgacc cagcacacag ctacacatcc gtcatggttg 1081 atggagaact ttattcgggg acgtcgtata attttttggg aagtgaaccc atcatctccc 1141 gaaattcttc ccacagtcct ctgaggacag aatatgcaat cccttggctg aacgagccta 1201 gtttcgtgtt tgctgacgtg atccgaaaaa gcccagacag ccccgacggc gaggatgaca 1261 gggtctactt cttcttcacg gaggtgtctg tggagtatga gtttgtgttc agggtgctga 1321 tcccacggat agcaagagtg tgcaaggggg accagggcgg cctgaggacc ttgcagaaga 1381 aatggacctc cttcctgaaa gcccgactca tctgctcccg gccagacagc ggcttggtct 1441 tcaatgtgct gcgggatgtc ttcgtgctca ggtccccggg cctgaaggtg cctgtgttct 1501 atgcactctt caccccacag ctgaacaacg tggggctgtc ggcagtgtgc gcctacaacc 1561 tgtccacagc cgaggaggtc ttctcccacg ggaagtacat gcagagcacc acagtggagc 1621 agtcccacac caagtgggtg cgctataatg gcccggtacc caagccgcgg cctggagcgt 1681 gcatcgacag cgaggcacgg gccgccaact acaccagctc cttgaatttg ccagacaaga 1741 cgctgcagtt cgttaaagac caccctttga tggatgactc ggtaacccca atagacaaca 1801 ggcccaggtt aatcaagaaa gatgtgaact acacccagat cgtggtggac cggacccagg 1861 ccctggatgg gactgtctat gatgtcatgt ttgtcagcac agaccgggga gctctgcaca 1921 aagccatcag cctcgagcac gctgttcaca tcatcgagga gacccagctc ttccaggact 1981 ttgagccagt ccagaccctg ctgctgtctt caaagaaggg caacaggttt gtctatgctg 2041 gctctaactc gggcgtggtc caggccccgc tggccttctg tgggaagcac ggcacctgcg 2101 aggactgtgt gctggcgcgg gacccctact gcgcctggag cccgcccaca gcgacctgcg 2161 tggctctgca ccagaccgag agccccagca ggggtttgat tcaggagatg agcggcgatg 2221 cttctgtgtg cccggataaa agtaaaggaa gttaccggca gcattttttc aagcacggtg 2281 gcacagcgga actgaaatgc tcccaaaaat ccaacctggc ccgggtcttt tggaagttcc 2341 agaatgacgt gttgaaggcc gagagcccca agtacggtct tatgggcaga aaaaacttgc 2401 tcatcttcaa cttgtcagaa ggagacagtg gggtgtacca gtgcctgtca gaggagaggg 2461 ttaagaacaa aacggtcttc caagtggtcg ccaagcacgt cctggaagtg aaggtggttc 2521 caaagcccgt agtggccccc accttgtcag ttgttcagac agaaggtagt aggattgcca 2581 ccaaagtgtt ggtggcatcc acccaagggt cttctccccc aaccccagcc gtgcaggcca 2641 cctcctccgg ggccatcacc cttcctccca agcctgcgcc caccggcaca tcctgcgaac 2701 caaagatcgt catcaacacg gtcccccagc tccactcgga gaaaaccatg tatcttaagt 2761 ccagcgacaa ccgcctcctc atgtccctct tcctcttctt ctttgttctc ttcctctgcc 2821 tctttttcta caactgctat aagggatacc tgcccagaca gtgcttgaaa ttccgctcgg 2881 ccctactaat tgggaagaag aagcccaagt cagatttctg tgaccgtgag cagagcctga 2941 aggagacgtt agtagagcca gggagcttct cccagcagaa tggggagcac cccaagccag 3001 ccctggacac cggctatgag accgagcaag acaccatcac cagcaaagtc cccacggata 3061 gggaggactc acagaggatc gacgaccttt ctgccaggga caagcccttt gacgtcaagt 3121 gtgagctgaa gttcgctgac tcagacgcag atggagactg aggccggctg tgcatccccg 3181 ctggtgcctc ggctgcgacg tgtccaggcg tggagagttt tgtgtttctc ctgttcagta 3241 tccgagtctc gtgcagtgct gcgtaggtta gcccgcatcg tgcagacaac ctcagtcctc 3301 ttgtctattt tctcttgggt tgagcctgtg acttggtttc tctttgtcct tttggaaaaa 3361 tgacaatcct tgcatcccag tcttgtgttc cgaagtcagt cggagtactt gaagaaggcc 3421 cacgggcggc acggagttcc tgagcccttt ctgtagtggg ggaaaggtgg ctggacctct 3481 gttggctgag aagagcatcc cttcagcttc ccctccccgt agcagccact aaaagattat 3541 ttaattccag attggaaatg acattttagt ttatcagatt ggtaacttat cgcctgttgt 3601 ccagattggc acgaaccttt tcttccactt aattattttt ttaggatttt gctttgattg 3661 tgtttatgtc atgggtcatt tttttttagt tacagaagca gatgtgttaa tatttagaag 3721 aagatgtata tcttccagat tttgttatat atttggcata aaatacggct tacgttgctt 3781 aagattctca gggataaact tccttttgct aaatgcattc tttctgcttt tagaaatgta 3841 gacataaaca ctccccggag cccactcacc ttttttcttt ttcttttttt ttttttaact 3901 ttattccttg agggaagcat tgtttttgga gagattttct ttctgtactt cgttttactt 3961 ttcttttttt ttaactttta ctctctcgaa gaagaggacc ttcccacatc cacgaggtgg 4021 gttttgagca agggaaggta gcctggatga gctgagtgga gccaggctgg cccagagctg 4081 agatgggagt gcggtacaat ctggagccca cagctgtcgg tcagaacctc ctgtgagaca 4141 gatggaacct tcacaagggc gcctttggtt ctctgaacat ctcctttctc ttcttgcttc 4201 aattgcatac ccactgcctg cccagacttt ctatccagcc tcactgagct gcccactact 4261 ggaagggaac tgggcctcgg tggccggggc cgcgagctgt gaccacagca ccctcaagca 4321 tacggcgctg ttcctgccac tgtcctgaag atgtgaatgg gtggtacgat ttcaacactg 4381 gttaatttca cactccatct ccccgctttg taaataccca tcgggaagag actttttttc 4441 catggtgaag agcaataaac tctggatgtt tgtgcgcgtg tgtggacagt cttatcttcc 4501 agcatgatag gatttgacca ttttggtgta aacatttgtg ttttataaga tttaccttgt 4561 ttttattttt ctactttgaa ttgtatacat ttggaaagta cccaaataaa tgagaagctt 4621 ctatccttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa //