LOCUS       BC054500                4675 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
            domain (TM) and short cytoplasmic domain, (semaphorin) 4D, mRNA
            (cDNA clone MGC:57659 IMAGE:5551182), complete cds.
ACCESSION   BC054500
VERSION     BC054500.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4675)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 4675)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 107 Row: f Column: 2
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 33942063.
FEATURES             Location/Qualifiers
     source          1..4675
                     /db_xref="H-InvDB:HIT000054075"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:57659 IMAGE:5551182"
                     /tissue_type="Eye, retinoblastoma"
                     /clone_lib="NIH_MGC_67"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..4675
                     /gene="SEMA4D"
                     /gene_synonym="CD100"
                     /gene_synonym="coll-4"
                     /gene_synonym="M-sema G"
                     /gene_synonym="M-sema-G"
                     /db_xref="GeneID:10507"
                     /db_xref="HGNC:HGNC:10732"
                     /db_xref="MIM:601866"
     CDS             573..3161
                     /gene="SEMA4D"
                     /gene_synonym="CD100"
                     /gene_synonym="coll-4"
                     /gene_synonym="M-sema G"
                     /gene_synonym="M-sema-G"
                     /codon_start=1
                     /product="sema domain, immunoglobulin domain (Ig),
                     transmembrane domain (TM) and short cytoplasmic domain,
                     (semaphorin) 4D"
                     /protein_id="AAH54500.1"
                     /db_xref="GeneID:10507"
                     /db_xref="HGNC:HGNC:10732"
                     /db_xref="MIM:601866"
                     /translation="MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHE
                     PDIYNYSALLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGK
                     SKQTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDP
                     AHSYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIR
                     KSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLK
                     ARLICSRPDSGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAE
                     EVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQ
                     FVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHK
                     AISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGT
                     CEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFF
                     KHGGTAELKCSQKSNLARVFWKFQNDVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQC
                     LSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTQGSSP
                     PTPAVQATSSGAITLPPKPAPTGTSCEPKIVINTVPQLHSEKTMYLKSSDNRLLMSLF
                     LFFFVLFLCLFFYNCYKGYLPRQCLKFRSALLIGKKKPKSDFCDREQSLKETLVEPGS
                     FSQQNGEHPKPALDTGYETEQDTITSKVPTDREDSQRIDDLSARDKPFDVKCELKFAD
                     SDADGD"
BASE COUNT         1124 a         1218 c         1185 g         1148 t
ORIGIN      
        1 gctgtaacac tcaccgtgaa ggtctgcagc ttcactcccg agccagcgag accacgaacc
       61 caccagaagg aagaaactct gaacacatct gaacatcaga agggacagac tccagacgcg
      121 ccaccactct gctaacacca gatagtggaa agaaaccatg tgctgaaatg tttgacgaca
      181 ctgatggttt gactctgcta actggaatgg cttattgtgc aagaaagtac acctggtcgg
      241 gtcctggggc tcatctctag caccagcaaa gatttctgaa gacgtctttc tagaaatgac
      301 tggaaagttt caagaggcat aagatacagc atttcttctg aggccctgaa gaagtatcaa
      361 gtgggctttg acattgcggt ggtgagagcg acccctcctc acctggagaa ctgggaaatg
      421 tggattctca gggaccgcgc tgttcacgag ctccaggctg tgctgctggc cctggtcctg
      481 gggcgctgag ccgcatctgc aatagcacac ttgcccggcc acctgctgcc gtgagccttt
      541 gctgctgaag cccctggggt cgcctctacc tgatgaggat gtgcaccccc attagggggc
      601 tgctcatggc ccttgcagtg atgtttggga cagcgatggc atttgcaccc ataccccgga
      661 tcacctggga gcacagagag gtgcacctgg tgcagtttca tgagccagac atctacaact
      721 actcagcctt gctgctgagc gaggacaagg acaccttgta cataggtgcc cgggaggcgg
      781 tcttcgctgt gaacgcactc aacatctccg agaagcagca tgaggtgtat tggaaggtct
      841 cagaagacaa aaaagcaaaa tgtgcagaaa aggggaaatc aaaacagaca gagtgcctca
      901 actacatccg ggtgctgcag ccactcagcg ccacttccct ttacgtgtgt gggaccaacg
      961 cattccagcc ggcctgtgac cacctgaact taacatcctt taagtttctg gggaaaaatg
     1021 aagatggcaa aggaagatgt ccctttgacc cagcacacag ctacacatcc gtcatggttg
     1081 atggagaact ttattcgggg acgtcgtata attttttggg aagtgaaccc atcatctccc
     1141 gaaattcttc ccacagtcct ctgaggacag aatatgcaat cccttggctg aacgagccta
     1201 gtttcgtgtt tgctgacgtg atccgaaaaa gcccagacag ccccgacggc gaggatgaca
     1261 gggtctactt cttcttcacg gaggtgtctg tggagtatga gtttgtgttc agggtgctga
     1321 tcccacggat agcaagagtg tgcaaggggg accagggcgg cctgaggacc ttgcagaaga
     1381 aatggacctc cttcctgaaa gcccgactca tctgctcccg gccagacagc ggcttggtct
     1441 tcaatgtgct gcgggatgtc ttcgtgctca ggtccccggg cctgaaggtg cctgtgttct
     1501 atgcactctt caccccacag ctgaacaacg tggggctgtc ggcagtgtgc gcctacaacc
     1561 tgtccacagc cgaggaggtc ttctcccacg ggaagtacat gcagagcacc acagtggagc
     1621 agtcccacac caagtgggtg cgctataatg gcccggtacc caagccgcgg cctggagcgt
     1681 gcatcgacag cgaggcacgg gccgccaact acaccagctc cttgaatttg ccagacaaga
     1741 cgctgcagtt cgttaaagac caccctttga tggatgactc ggtaacccca atagacaaca
     1801 ggcccaggtt aatcaagaaa gatgtgaact acacccagat cgtggtggac cggacccagg
     1861 ccctggatgg gactgtctat gatgtcatgt ttgtcagcac agaccgggga gctctgcaca
     1921 aagccatcag cctcgagcac gctgttcaca tcatcgagga gacccagctc ttccaggact
     1981 ttgagccagt ccagaccctg ctgctgtctt caaagaaggg caacaggttt gtctatgctg
     2041 gctctaactc gggcgtggtc caggccccgc tggccttctg tgggaagcac ggcacctgcg
     2101 aggactgtgt gctggcgcgg gacccctact gcgcctggag cccgcccaca gcgacctgcg
     2161 tggctctgca ccagaccgag agccccagca ggggtttgat tcaggagatg agcggcgatg
     2221 cttctgtgtg cccggataaa agtaaaggaa gttaccggca gcattttttc aagcacggtg
     2281 gcacagcgga actgaaatgc tcccaaaaat ccaacctggc ccgggtcttt tggaagttcc
     2341 agaatgacgt gttgaaggcc gagagcccca agtacggtct tatgggcaga aaaaacttgc
     2401 tcatcttcaa cttgtcagaa ggagacagtg gggtgtacca gtgcctgtca gaggagaggg
     2461 ttaagaacaa aacggtcttc caagtggtcg ccaagcacgt cctggaagtg aaggtggttc
     2521 caaagcccgt agtggccccc accttgtcag ttgttcagac agaaggtagt aggattgcca
     2581 ccaaagtgtt ggtggcatcc acccaagggt cttctccccc aaccccagcc gtgcaggcca
     2641 cctcctccgg ggccatcacc cttcctccca agcctgcgcc caccggcaca tcctgcgaac
     2701 caaagatcgt catcaacacg gtcccccagc tccactcgga gaaaaccatg tatcttaagt
     2761 ccagcgacaa ccgcctcctc atgtccctct tcctcttctt ctttgttctc ttcctctgcc
     2821 tctttttcta caactgctat aagggatacc tgcccagaca gtgcttgaaa ttccgctcgg
     2881 ccctactaat tgggaagaag aagcccaagt cagatttctg tgaccgtgag cagagcctga
     2941 aggagacgtt agtagagcca gggagcttct cccagcagaa tggggagcac cccaagccag
     3001 ccctggacac cggctatgag accgagcaag acaccatcac cagcaaagtc cccacggata
     3061 gggaggactc acagaggatc gacgaccttt ctgccaggga caagcccttt gacgtcaagt
     3121 gtgagctgaa gttcgctgac tcagacgcag atggagactg aggccggctg tgcatccccg
     3181 ctggtgcctc ggctgcgacg tgtccaggcg tggagagttt tgtgtttctc ctgttcagta
     3241 tccgagtctc gtgcagtgct gcgtaggtta gcccgcatcg tgcagacaac ctcagtcctc
     3301 ttgtctattt tctcttgggt tgagcctgtg acttggtttc tctttgtcct tttggaaaaa
     3361 tgacaatcct tgcatcccag tcttgtgttc cgaagtcagt cggagtactt gaagaaggcc
     3421 cacgggcggc acggagttcc tgagcccttt ctgtagtggg ggaaaggtgg ctggacctct
     3481 gttggctgag aagagcatcc cttcagcttc ccctccccgt agcagccact aaaagattat
     3541 ttaattccag attggaaatg acattttagt ttatcagatt ggtaacttat cgcctgttgt
     3601 ccagattggc acgaaccttt tcttccactt aattattttt ttaggatttt gctttgattg
     3661 tgtttatgtc atgggtcatt tttttttagt tacagaagca gatgtgttaa tatttagaag
     3721 aagatgtata tcttccagat tttgttatat atttggcata aaatacggct tacgttgctt
     3781 aagattctca gggataaact tccttttgct aaatgcattc tttctgcttt tagaaatgta
     3841 gacataaaca ctccccggag cccactcacc ttttttcttt ttcttttttt ttttttaact
     3901 ttattccttg agggaagcat tgtttttgga gagattttct ttctgtactt cgttttactt
     3961 ttcttttttt ttaactttta ctctctcgaa gaagaggacc ttcccacatc cacgaggtgg
     4021 gttttgagca agggaaggta gcctggatga gctgagtgga gccaggctgg cccagagctg
     4081 agatgggagt gcggtacaat ctggagccca cagctgtcgg tcagaacctc ctgtgagaca
     4141 gatggaacct tcacaagggc gcctttggtt ctctgaacat ctcctttctc ttcttgcttc
     4201 aattgcatac ccactgcctg cccagacttt ctatccagcc tcactgagct gcccactact
     4261 ggaagggaac tgggcctcgg tggccggggc cgcgagctgt gaccacagca ccctcaagca
     4321 tacggcgctg ttcctgccac tgtcctgaag atgtgaatgg gtggtacgat ttcaacactg
     4381 gttaatttca cactccatct ccccgctttg taaataccca tcgggaagag actttttttc
     4441 catggtgaag agcaataaac tctggatgtt tgtgcgcgtg tgtggacagt cttatcttcc
     4501 agcatgatag gatttgacca ttttggtgta aacatttgtg ttttataaga tttaccttgt
     4561 ttttattttt ctactttgaa ttgtatacat ttggaaagta cccaaataaa tgagaagctt
     4621 ctatccttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//