LOCUS BC054499 5678 bp mRNA linear HUM 19-OCT-2006 DEFINITION Homo sapiens jumonji, AT rich interactive domain 1C, mRNA (cDNA clone MGC:57577 IMAGE:5492114), complete cds. ACCESSION BC054499 VERSION BC054499.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5678) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5678) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUL-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC054499.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 107 Row: e Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 11321604. FEATURES Location/Qualifiers source 1..5678 /db_xref="H-InvDB:HIT000054074" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:57577 IMAGE:5492114" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..5678 /gene="JARID1C" /gene_synonym="DXS1272E" /gene_synonym="MRXJ" /gene_synonym="MRXSJ" /gene_synonym="XE169" /db_xref="GeneID:8242" /db_xref="HGNC:HGNC:11114" /db_xref="MIM:314690" CDS 288..4967 /gene="JARID1C" /gene_synonym="DXS1272E" /gene_synonym="MRXJ" /gene_synonym="MRXSJ" /gene_synonym="XE169" /codon_start=1 /product="jumonji, AT rich interactive domain 1C" /protein_id="AAH54499.1" /db_xref="GeneID:8242" /db_xref="HGNC:HGNC:11114" /db_xref="MIM:314690" /translation="MEPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGIC KIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKI PNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI VYPYEMYQSGANLVCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPD PEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEEL GGDVKVESTSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDE DDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYT LQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGS GFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFS AFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQL VTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPA GRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKA LLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCS SSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALES EARERRFPNSELLQQLKNCLSEAEACVSRALGLVSGQEAGPHRVAGLQMTLTELRAFL DQMNNLPCAMHQIGDVKGVLEQVEAYQAEAREALASLPSSPGLLQSLLERGRQLGVEV PEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAVMRGLLVAGASVAPSPAVDKAQAEL QELLTIAERWEEKAHLCLEARQKHPPATLEAIIREAENIPVHLPNIQALKEALAKARA WIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTF LKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVI VAFKEGEQKEKEGILQLRRTNSAKPSPLASSSTASSTTSICVCGQVLAGAGALQCDLC QDWFHGRCVSVPRLLSSPRPNPTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLV ALQRLPVRLPEGEALQCLTERAISWQGRARQALASEDVTALLGRLAELRQRLQAEPRP EEPPNYPAAPASDPLREGSGKDMPKVQGLLENGDSVTSPEKVAPEEGSGKRDLELLSS LLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERIRTL LELEKAERHGSRARGRALERRRRRKVDRGGEGDDPAREELEPKRVRSSGPEAEEVQEE EELEEETGGEGPPAPIPTTGSPSTQENQNGLEPAEGTTSGPSAPFSTLTPRLHLPCPQ QPPQQQL" BASE COUNT 1227 a 1609 c 1708 g 1134 t ORIGIN 1 ggccgcggcg tttgggaggt aactgtggtg gcgaaggctg cggtagtggg gaggcaacca 61 cacagtttgg aagaaacgga gcgggacgaa gaggcggtag cagtagagtc agcctgagac 121 tctcagagca cgacggccac acgccccctt aggccctcgg cgggcggcgg ctgccccgct 181 tagggcctag cctccgagca ttgcctcggc ttcaaacagc ggcggcgcca tgagtcctta 241 agggcggtcc aagcctcccg atccctggcc cagacctcgg gcccaccatg gagccggggt 301 ccgacgattt cctaccgcca ccggagtgcc cggtgttcga gcctagctgg gccgagttcc 361 gagaccctct tggctacatc gcgaaaatca ggcccatcgc agagaaatcg ggcatttgca 421 agatccgccc acccgcggac tggcagccac cctttgctgt ggaagtggac aacttcaggt 481 ttaccccccg aatccagagg ctgaatgagc tagaggccca gacgagagtg aaactgaact 541 acttggacca gattgccaaa ttctgggaaa tccagggctc ctccttaaag attcccaatg 601 tagaacggcg gatcttggac ctctacagtc tcagcaaaat tgtggtggag gaaggtggtt 661 atgaagctat ctgcaaggac cgtcggtggg ctcgggtagc ccagcgcctc aactatccac 721 caggcaaaaa tattggctcc ttgctacgct cccactacga acgcattgtt tatccctatg 781 aaatgtacca gtctggagcc aaccttgtgt gtaacacacg tccatttgat aatgaggaga 841 aggacaagga atacaaaccc cacagcatcc ccctacgaca gtctgtgcag ccttccaagt 901 tcaacagcta tggccggcgg gccaagagac tgcagcctga tccggaaccc acagaggaag 961 acattgagaa gaatccagag ctgaaaaagc tacagatcta tggggcaggc cccaagatga 1021 tgggcctggg cctcatggcc aaagacaaga ctctgcggaa gaaagataag gaggggcctg 1081 agtgtccccc cacagtagtg gtgaaggagg agttaggtgg ggatgtgaag gtggagtcaa 1141 catcgcctaa gaccttcctg gagagcaagg aggagctgag tcacagccca gaaccctgca 1201 ccaagatgac catgaggcta cggaggaacc acagcaatgc ccagtttatt gagtcatatg 1261 tctgccggat gtgttctcga ggggatgagg atgacaagct cctgctgtgt gatggctgtg 1321 atgacaacta ccacatcttc tgcctgctgc ctcctctgcc tgagatcccc aagggtgtct 1381 ggcggtgccc aaagtgtgtc atggcggagt gtaagcggcc cccagaagcc tttggctttg 1441 agcaggctac ccgggaatac actctgcaga gctttggcga gatggccgac tcctttaaag 1501 ctgactactt caacatgccc gtgcatatgg tgcccacaga acttgtggag aaggagttct 1561 ggaggctggt aaatagcatt gaggaagatg tgactgttga gtatggagct gacatccatt 1621 ccaaagaatt tggcagcggt ttccctgtca gtgacagtaa acggcaccta acccccgaag 1681 aggaggagta tgctaccagt ggttggaacc taaatgtgat gccggtgttg gaacagtctg 1741 tactgtgcca catcaatgca gatatctctg gcatgaaggt gccctggctc tacgtgggca 1801 tggtcttctc agccttttgc tggcatattg aggatcactg gagttactcc attaactacc 1861 tccactgggg tgagccgaag acctggtatg gggtgccctc acttgcagca gaacatttgg 1921 aagaagtgat gaagaagctg acacctgaac tatttgatag ccagcctgac ctcctgcacc 1981 aacttgtcac cctcatgaat cccaacaccc tcatgtccca tggtgtgcca gttgtccgca 2041 caaaccagtg tgcaggagag tttgtcatca ccttcccccg tgcttaccac agcggcttca 2101 accaaggcta caactttgcc gaggctgtca acttttgcac tgctgactgg ttgcctgctg 2161 ggcgccagtg cattgagcac taccgccggc tccggagata ctgcgtcttc tcccatgagg 2221 agcttatctg caagatggct gcctgcccag agaagctaga cctgaacctg gcggcagctg 2281 tgcataagga gatgttcatc atggtgcaag aagagcggcg tctacgaaag gccctgctgg 2341 agaagggtat cacagaggct gagcgagagg ctttcgagct gctcccagat gatgagcgcc 2401 agtgtatcaa gtgcaagact acgtgtttcc tgtcagccct ggcctgctac gactgcccag 2461 acggccttgt ctgcctttcc cacatcaatg atctctgcaa gtgctccagt agccggcagt 2521 acctgcggta tcggtatacc ttggatgagc ttcctgccat gctgcataag ctgaaggttc 2581 gggctgagtc ctttgacacc tgggccaaca aagtgcgagt ggccctggag gtggaggatg 2641 ggcggaagcg cagccttgaa gaactgaggg cactagagtc tgaagcccgt gagcggaggt 2701 ttcctaatag tgagctgctg cagcaactaa agaactgcct gagtgaggca gaggcttgcg 2761 tgtcccgagc tctgggactg gtcagcggcc aggaagctgg cccccacagg gtggctggtc 2821 tacagatgac cctgactgag ctccgggcct ttctggacca gatgaacaac ctgccttgcg 2881 ccatgcacca gattggggat gtcaagggtg ttctggaaca ggtggaggcc taccaggctg 2941 aggctcgtga ggccctggcc tcactgccct ccagtccagg gctactgcag tccctgttgg 3001 agagggggcg gcagctgggg gtggaggtgc ctgaggccca gcagctccag cggcaggtgg 3061 aacaggcgcg atggctggat gaggtgaaac gcacactggc cccctcagcc cgaaggggca 3121 ccttggctgt catgcgagga ctgttggtcg cgggtgccag tgtagcccct agccctgctg 3181 tggataaagc ccaggccgag ctgcaggaac tgctgaccat tgctgaacgc tgggaggaga 3241 aagcccacct ctgcctggag gccaggcaga agcatccacc agccacactt gaggccataa 3301 tccgtgaagc ggaaaacatc cctgttcacc tgcccaacat ccaggctctc aaggaggctc 3361 ttgctaaggc ccgggcctgg attgctgatg ttgatgagat ccaaaatggt gaccactacc 3421 cctgcctgga tgacttggag ggcctagtag ctgtgggccg ggacctacct gtggggctgg 3481 aggagctgag acagctagag ctacaggtac tgacagcgca ctcctggagg gagaaggcct 3541 ccaagacctt cctcaagaaa aattcttgct acacgctgct ggaggttctc tgcccatgtg 3601 cagatgccgg ctcagacagc accaagcgca gccggtggat ggagaaggag ctggggttgt 3661 acaaatctga cacagagctg ctggggctgt ctgcgcagga cctcagggac ccaggctctg 3721 tgatcgtggc cttcaaggag ggggaacaga aggagaagga gggtatcctg cagctgcgtc 3781 gcaccaattc ggccaagccc agtccactgg catcatcgag cacggcctcc tctacaacct 3841 ctatctgtgt gtgtgggcag gtgctggctg gggcgggagc tctgcagtgt gacctgtgtc 3901 aggactggtt ccatgggcgg tgtgtgtcag tgcctcgcct cctcagctct ccgaggccca 3961 atcccacctc atccccactg ctggcctggt gggaatggga caccaaattc ctgtgtccac 4021 tgtgtatgcg ctcaaggcgc ccgcgcctgg agaccatcct ggcactgctg gtagccctgc 4081 agagactgcc tgtgcggctg cccgagggcg aggccctgca gtgcctcaca gagagggcca 4141 tcagctggca aggccgcgcc aggcaggctc tggcctctga agatgtgact gctcttttgg 4201 gacggctggc tgagctccgc caacggctac aggctgaacc tagacctgag gagcctccta 4261 actaccctgc agcccctgct tctgaccccc tcagagaggg cagtggcaag gatatgccta 4321 aggtccaggg cttactggag aatggagaca gtgtgaccag tcctgagaag gtagccccgg 4381 aggagggctc aggtaagaga gatctggagc tgctgtcctc gctgttgcca cagttgactg 4441 gccctgtgtt ggaactgcct gaggcaaccc gggccccctt ggaggagctc atgatggagg 4501 gggacctgct cgaggtgacc ctggatgaga accacagcat atggcagctg ctgcaggctg 4561 gacagccccc agacctggag aggatccgca cacttctgga gctggagaag gcagagcgtc 4621 acgggagtcg ggctcggggc cgggccctgg agaggcggcg gcggcggaag gtggatcggg 4681 gtggggaggg cgatgaccca gcccgagagg agctagagcc aaagagggta cggagctcag 4741 ggccagaggc tgaggaggtc caggaggagg aagagctgga ggaggagact gggggtgagg 4801 gcccccctgc acccatcccc accactggca gccccagcac ccaggagaac cagaatggct 4861 tggaaccggc ggaagggacc acttcaggcc cctcggcccc tttctccact ctgactcccc 4921 ggctgcatct gccctgccca cagcagccgc ctcagcaaca gttgtgacag tggctgagcc 4981 tagcacagac cctgacagag acccccctcg gcctcaagga tcctctttct gaccatcaag 5041 cctgcttctt ggggggtggg cgggtagggg gggtggccat ccctgctacc cgcccacccc 5101 tgagtccctt gacttttgta ttctgactcc aaggtattgt tcagacctca gctcctgggg 5161 gccggcccct ggagtcttcc ctccctggta gcctctaacc agcattccca gacacctgag 5221 gcagatagat ggatgggctg gtgggcaggg gggtggctgg ggctgggcca tcaccattcc 5281 agagacaagg ccagtgtata tgcaaactgg gggactctcc tcccttctct ccccagttct 5341 ggtcctggcc aggccatgct acactaaccc ctgcccccac tctcctcccc tcttttcctt 5401 ccttcctacc cccttctccc tctcccttcc cctgactgtt ccacccagga ggaggaaact 5461 tcacatagcc gtgctcacag ttttttattt taaaggaatt tggctgggga gctgaacagg 5521 gctccctgtg atctgaagaa agcttttggt gcttgtcctc acaaccacct cagtcctccc 5581 tccctgtcct cccctgtctc ctttcctcct cctgggttca tgttgtaata aaagaagatt 5641 gttggtgtgt aattaatttg ttcaaaaaaa aaaaaaaa //