LOCUS BC054133 1086 bp mRNA linear VRT 15-JUL-2006
DEFINITION Danio rerio zgc:63689, mRNA (cDNA clone MGC:63689 IMAGE:5915876),
complete cds.
ACCESSION BC054133
VERSION BC054133.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1086)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1086)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Sumio Sugano
cDNA Library Preparation: Dr. Sumio Sugano
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 118 Row: p Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32450443.
FEATURES Location/Qualifiers
source 1..1086
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:63689 IMAGE:5915876"
/tissue_type="Whole body, adult male"
/clone_lib="Sugano SJD adult male"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..1086
/gene="zgc:63689"
/gene_synonym="MGC63689"
/db_xref="GeneID:393371"
/db_xref="ZFIN:ZDB-GENE-040426-1238"
CDS 187..822
/gene="zgc:63689"
/gene_synonym="MGC63689"
/codon_start=1
/product="zgc:63689"
/protein_id="AAH54133.1"
/db_xref="GeneID:393371"
/db_xref="ZFIN:ZDB-GENE-040426-1238"
/translation="MTETSRPQRKLSRAGESLYQTLGLQKGASSEDIKKAYRKLALKH
HPDKNPNNPEAAEKFKEINNANSILNDETKRQIYDEYGSMGLYIADQFGEDSVKYYFL
MSKCWFKTLLCIGTILTCCCCCCCCCFCCGKCGGSEPPDNFQYVDPEELAEEEERSRD
NETIIIGQPIPSPAPAADSGYPVIVGMPIPLSDGDTASLIPPDTHVEVIKE"
BASE COUNT 323 a 244 c 232 g 287 t
ORIGIN
1 actttttgta cttgacgtaa cacagaaact ttatttccta cttcctggtc ttaaactctg
61 ctcttgatca atggctcagc gtgctggaaa aacgctgcaa atatagttaa acatgaaaac
121 acgcgcagct ttatcaaaca tccgcctcag cttcacttct tgatcgtgat tttgcagaat
181 tggaccatga cagaaacgag tcgacctcag cgcaagctgt ccagagctgg agagagttta
241 taccagacgt taggcctgca gaaaggagcg tcgtctgaag atattaagaa agcatacagg
301 aaacttgcac tgaagcatca cccggataaa aaccccaaca acccggaagc agcagagaag
361 tttaaagaga tcaacaatgc caacagcatc ctcaatgatg agactaaacg tcagatctat
421 gatgagtacg gctccatggg cctctacatc gcagatcagt ttggagagga cagcgtgaaa
481 tattacttcc tcatgtccaa gtgctggttt aagactcttc tctgtatagg gacgatctta
541 acgtgctgct gctgctgttg ctgctgctgt ttctgctgtg ggaaatgtgg cggctcagag
601 cctccagata atttccagta tgtagatcca gaagagctgg cggaggagga agagcgcagc
661 agagataatg aaacgataat aataggacag cccattccct ctccggctcc agctgcagat
721 tcaggttatc ctgtgatcgt gggaatgcct attcctctat cagatggaga cactgctagc
781 ctgatccctc cagacacaca cgtggaggtc atcaaggagt agagcaacaa acacacacca
841 tcccgaagac tgattcgttt gtattacaca cagtgtcttt gcagtttgtg tggcttgttt
901 tgtctccaca catgctgttt ttgtttacat cattttataa ttgccttctg tttgcttgaa
961 tgtgtcttaa tgtagagcaa cttcatgtcc aaagcttctt tacatgagct ccagtgtaca
1021 gaccaacata tatatgaaat taaatatcat ccaatattgt gatccaataa aaaaaaaaaa
1081 aaaaaa
//