LOCUS BC054116 4402 bp mRNA linear HTC 19-OCT-2006
DEFINITION Homo sapiens cDNA clone IMAGE:4823682, containing frame-shift
errors.
ACCESSION BC054116
VERSION BC054116.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4402)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4402)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: i Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22202610
This clone has the following problem: frame shifted.
FEATURES Location/Qualifiers
source 1..4402
/db_xref="H-InvDB:HIT000259429"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4823682"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 1246 a 995 c 1054 g 1107 t
ORIGIN
1 tggagccgcg ggagcggagc cggggttagc ggcgctgctg gaagatggcg agcggccggg
61 acgagcggcc gccttggcgg ctagggcggc tcctgttgct catgtgcctg ctgctgctgg
121 ggagctcggc ccgggcggct cacatcaaga aggcggaggc gactaccaca actacgagcg
181 cgggcgccga ggcggccgag ggccagttcg accgctacta ccacgaagag gagttggagt
241 cggcgctgag ggaggcggcg gccgcgggcc tccccggcct ggcccgcctc tttagcatcg
301 gccgctcggt ggaaggccgg ccgctgtggg tgcttcgcct caccgccggc ctggggtcgc
361 taatccctga gggcgacgcg gggcctgacg ctgccgggcc cgacgctgcg gggccgctgc
421 tgcccggccg gccccaggtg aagctggtgg gcaacatgca tggcgacgag accgtgtcgc
481 gccaggtgtt gatctatttg gcccgcgagc tggcggccgg ctaccgccgc ggggacccgc
541 gcctggtccg cctgctcaac accaccgacg tgtacctgct gcccagcctc aaccccgatg
601 gcttcgagcg tgcccgcgag ggcgactgtg gcttcggcga cggcggcccg tccggggcca
661 gcggccgcga cctcaaccga agctttcccg accagtttag caccggcgaa ccccccgccc
721 tggacgaggt gcccgaggtg cgcgccctca tcgagtggat ccgcaggaac aagtttgtgc
781 tttctggaaa tctgcatggt ggctcagtgg tagcaagcta tccttttgat gattctccag
841 aacataaggc cactggaatc tatagcaaaa cctcagatga tgaagtattt aaatacttgg
901 caaaagctta tgcttcaaac caccccataa tgaaaactgg tgagcctcat tgtccaggag
961 atgaagacga gactttcaaa gatggaatca caaacggcgc acattggtat gatgtggaag
1021 gtggtatgca agattacaat tatgtgtggg ccaactgttt tgagatcaca ttagaactgt
1081 cttgttgcaa gtacccacct gcttcacagc ttcgacagga atgggagaac aatcgtgagt
1141 ctttgatcac attgattgaa aaggttcaca ttggagtgaa aggatttgtt aaagattcca
1201 taacaggatc tgggttagag aatgcaacca tctcagtggc tggtattaat cataatatca
1261 caacaggcag atttggtgat ttctaccgat tacttgttcc tggaacttac aaccttacag
1321 tagttttaac tgggtatatg ccattgactg ttactaatgt agtggtgaaa gaaggaccag
1381 ccacagaggt ggatttttct cttaggccaa ctgtaacttc agtaatccct gacacgacag
1441 aggctgtatc aactgctagc acagttgcta tacctaatat tctttctgga acatcatcct
1501 cctaccagcc aattcagcca aaggactttc accaccacca tttccctgat atggaaatct
1561 tcttgagaag gtttgccaat gaatatccta acattacccg gctttattcc ttgggaaaat
1621 cagtagagtc aagagaactt tatgtgatgg agatatctga taatccgggt gtccatgaac
1681 caggtgaacc agaatttaag tacattggaa atatgcatgg aaatgaagtg gttggaagag
1741 aactgctgtt gaacctcata gaataccttt gtaagaactt tggaacagac cctgaagtca
1801 cagatttggt tcataacact agaattcacc ttatgccatc catgaatcct gatgggtatg
1861 aaaagtccca ggaaggagat tcaataagtg taattggcag aaacaacagc aacaactttg
1921 acctgaaccg aaatttccca gaccagtttg ttcagatcac agatcctacg caaccagaaa
1981 ctattgctgt aatgagctgg atgaagtcct atccatttgt actttcagca aacctgcatg
2041 gaggttcttt ggtggttaac tacccttttg atgatgatga acaaggactt gccacatata
2101 gtaaatcacc agatgatgct gtgttccaac aaatagcact ttcttattcc aaggaaaatt
2161 cccagatgtt tcaaggtaga ccttgcaaga atatgtatcc taatgaatat tttcctcatg
2221 gaataacaaa tggagctagt tggtataatg tgccaggagg aatgcaggac tggaactatt
2281 tacaaacaaa ttgctttgaa gtgactattg aactaggttg tgtgaaatat ccacttgaga
2341 aagagctgcc aaacttttgg gaacagaatc gaagatcact aatccagttt atgaaacagg
2401 ttcatcaggg cgtcagagga tttgttctag atgccacaga tggcaggggt atattaaatg
2461 ccaccattag tgttgctgag attaatcacc cagtgactac ttacaaaact ggagattact
2521 ggcgtctctt ggttccagga acttataaaa tcacagcatc tgctcgaggg tataatccag
2581 ttaccaagaa tgtgactgtc aagagtgaag gcgctattca ggtcaacttc acacttgttc
2641 gatcctcaac agattcaaac aatgaatcaa agaaaggaaa aggggctagc agcagcacca
2701 atgatgccag tgatccaact actaaagagt ttgaaacttt aattaaagac ctttcagcgg
2761 agaatggttt ggaaagcctc atgttacgct cctcctcaaa tctggctctg gctctttatc
2821 gataccattc ctacaaagac ttatcagagt ttctgagagg acttgtaatg aactatccac
2881 atattacaaa tcttaccaat ttgggacaga gcactgaata tcgtcacatt tggtcccttg
2941 aaatctccaa taagcccaat gtatctgagc ctgaagaacc aaagattcgt tttgttgctg
3001 gtatccatgg aaatgcgcca gttggaactg aactgctttt ggctctggca gaatttctct
3061 gcctgaacta caaaaagaac ccagctgtta cccaattggt tgacaggact aggattgtga
3121 ttgtcccttc tctaaatcca gatgggcgag agagagctca agagaaagac tgtacttcaa
3181 aaataggaca aacaaatgct cgtggcaaag atttggatac agacttcaca aataatgcct
3241 cccaacctga gaccaaagcc atcattgaaa atttgattca aaaacaggac tttagtcttt
3301 ctgttgcctt agatggtggt tccatgctgg tcacatatcc ttatgcaagc cagtacagac
3361 agtggaaaat aaagagactc tgaagcattt ggcatctctt tatgcaaata atcatccatc
3421 catgcacatg ggtcagccca gttgcccaaa taaatcagat gagaatattc caggaggagt
3481 aatgcgtgga gcagaatggc atagtcacct gggcagcatg aaggattata gtgtcaccta
3541 tggccattgt ccggaaatca cagtatacac aagctgctgt tactttccta gtgctgcacg
3601 actcccttcc ttgtgggcag acaataagag atctcttctt agtatgttag tggaggttca
3661 caagggagtt catggatttg ttaaagataa gactggaaag ccaatctcta aagcagtcat
3721 tgtacttaat gaaggaataa aggtacaaac aaaagaggga ggttatttcc atgtactctt
3781 agcgccaggt gtccataaca ttattgccat cgctgatggg taccagcaac aacattcaca
3841 ggtctttgtg catcatgatg cagctagttc tgtggtgata gtctttgaca cagataaccg
3901 gatatttggt ttgccaaggg agcttgtggt aactgtatca ggtgctacta tgtcggcatt
3961 gatcctaaca gcttgcatta tttggtgcat ctgctcaatc aagtctaata gacacaagga
4021 tggctttcat cggctcaggc agcatcatga tgagtatgaa gatgaaattc gcatgatgtc
4081 taccggctcc aagaagtccc tcctaagcca tgagttccag gatgaaacag acactgaaga
4141 ggaaacatta tattctagca aacattgaaa aacacatttt gcatatctcc cagcataagt
4201 accaagcaaa attacagttc ctcttgggag aacactgcat taagaagaga gactctcttg
4261 cttcttcaaa gagctttggg aaattaaatt gctaaatttg tattctctgt gaatttcact
4321 ggcagttttg aacttccctt ccttaaagta ctctaaacct ttaaaaaaaa atctgattta
4381 tgcagcaaaa aaaaaaaaaa aa
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