LOCUS BC053858 4349 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens zinc finger protein 550, mRNA (cDNA clone MGC:61593
IMAGE:6044705), complete cds.
ACCESSION BC053858
VERSION BC053858.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4349)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4349)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: j Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255150
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..4349
/db_xref="H-InvDB:HIT000053996"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61593 IMAGE:6044705"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4349
/gene="ZNF550"
/db_xref="GeneID:162972"
/db_xref="HGNC:HGNC:28643"
CDS 183..1424
/gene="ZNF550"
/codon_start=1
/product="ZNF550 protein"
/protein_id="AAH53858.1"
/db_xref="GeneID:162972"
/db_xref="HGNC:HGNC:28643"
/translation="MLVTFKDVAVTFTREEWRQLDLAQRTLYREVMLETCGLLVSLGH
RVPKPELVHLLEHGQELWIVKRGLSHATCAGDRAQVHTREPTTYPPVLSERAFLRGSL
TLESSTSSDSRLGRARDEEGLLEMQKGKVTPETDLHKETHLGKVSLEGEGLGTDDGLH
SRALQEWLSADVLHECDSQQPGKDALIHAGTNPYKCKQCGKGFNRKWYLVRHQRVHTG
MKPYECNACGKAFSQSSTLIRHYLIHTGEKPYKCLECGKAFKRRSYLMQHHPIHTGEK
PYECSQCRKAFTHRSTFIRHNRTHTGEKPFECKECEKAFSNRAHLIQHYIIHTGEKPY
DCMACGKAFRCSSELIQHQRIHTGEKPYECTQCGKAFHRSTYLIQHSVIHTGEMPYKC
IECGKAFKRRSHLLQHQRVHT"
BASE COUNT 1241 a 903 c 996 g 1209 t
ORIGIN
1 cgtttgtggt agggcgtgtt ggtccgcgct ctcagaactg tgctgggaag gatggtaggg
61 cgactggggc tcacctccgc accgttgtag gacccggggt agggttttga gcccgtggga
121 gctgccccac gcggcctcgt cctgccaacg gtcggatggc ggagacgaag gacgcagcgc
181 agatgttggt gaccttcaag gatgtggctg tgacctttac ccgggaggag tggagacagc
241 tggacctggc ccagaggacc ctgtaccgag aggtgatgct ggagacctgt gggcttctgg
301 tttcactagg gcatcgggtt cccaaaccag agttggtcca cctgctagag catgggcagg
361 agctgtggat agtgaagaga ggcctctcac atgctacctg tgcaggtgac agagcacaag
421 ttcataccag agagccaacc acttacccgc cagtcttatc tgagcgggcc tttctccggg
481 gaagcctgac tctggaatct tcaacctcaa gtgattcgag gttggggaga gctagggatg
541 aggaagggct tttggaaatg cagaaaggta aagtgacacc ggagacagac ctccacaagg
601 agacccatct tgggaaagtg agccttgaag gtgaaggttt ggggacagat gatggtctgc
661 actccagggc attacaagag tggttatcag cagatgttct ccatgaatgt gactcacagc
721 aaccagggaa agacgccttg attcatgcag ggacaaaccc ctacaaatgc aagcagtgtg
781 ggaaaggttt taacaggaag tggtatctcg ttcgacatca gagggttcac actggaatga
841 aaccctatga atgcaatgca tgtgggaaag cctttagcca gagctcaact ctcattcggc
901 actacctcat ccacaccggg gagaaaccat acaagtgcct tgagtgtggg aaggccttca
961 aacgcaggtc gtacctcatg cagcaccatc caatccacac tggagagaaa ccctatgagt
1021 gtagtcaatg tcgaaaggcc ttcacccacc ggtctacttt tattcgccat aataggaccc
1081 acactggaga aaagcccttt gagtgcaaag aatgtgagaa agcctttagc aatagagccc
1141 acctaattca acattacatc atccacactg gagagaagcc ctatgattgc atggcatgtg
1201 gaaaggcctt cagatgcagc tcagaactca tacagcacca gcggattcac actggggaga
1261 agccctatga atgcacccag tgtgggaaag cctttcaccg gagcacgtac ctcattcagc
1321 actctgtcat ccacactggg gagatgccct acaagtgtat cgagtgtggg aaggccttca
1381 aacgcaggtc acaccttctg cagcaccaaa gggtccatac atgagagaac cctattgctg
1441 caatgaatac agcaaggcct ttacccactg ttattttatc attcataatg ggacccacac
1501 tgtaggaaga agtccctcga gtgcaaagaa tgtcaggaaa cttttcattt tttttgtcag
1561 ctctttctta actaacacat gagcagtcac tttggagaga agccctgtga atacagtgaa
1621 tgtaaggatc ccttcagtca ccactcagtt ctcactcatt gcagaaggat tcataccagg
1681 gggaaatgtg gaaggcattc catcaacatc agagaactca tgctggagaa agacattcca
1741 aatataacta ttaaggacag tctttggcca gagcagaaat cttactatct gagaatcata
1801 atgaaaagtt actacataat tgttattgat gtgagaaaac tttgtgacca ggttgtcact
1861 tgcttgtcct ataaagagcc atgctggaat ttgacccacc ttgggatttt ctctatgaac
1921 ttatgaaaac cttcagttac aggacagagt gcacagtttc ctctcctgtg ggaaggagag
1981 ttgactcttg aggaccccca ccctcctgca tcctctctct ggaaggctgc atgtattgta
2041 gctgtggctg tacttgtacc taaggccctg ggttcaagag agttggagaa acccctctag
2101 aaacatattg gctgtcatca aagggttctt tccaggcctg aggacctagg ccccagtttg
2161 tcccaaagca ggagtgtttt ccatgggata aaggacaccc taggtttttc ttagcttcca
2221 gctctttcca tacagtcttc actcaagtgt ttggtacaag gatctactat gaacttgctg
2281 ctgtgatagg caagaatctc atgagacacc tgtcatttag ctccatggcc actcactgtt
2341 gtggtcatac ttagaagagt gggatgcagt ggatggctgg gctatgggtc ctgcccttga
2401 gcagggaagg aacttactgt ctaatatagg aaaaacacat gagaacaggt gcaatatatt
2461 gacttaaact tgtttagcac ccgtttttaa gtcagtagaa gttttgaact tacagtaaaa
2521 gttgtgaact tctgtatgtt ttccacagtt tatgattgag gtaaaacatg ttttttgttt
2581 tgtttttgag acagagtttc actcttgttg cccaggctgg agtgcagtgg cgccatctca
2641 gctcactgca acttctgcct cccgagttca agggattctc ctgcctcagc ctcccgagta
2701 gctgggatta caggcgccca ccaccatgcc cggctagttt ttttgtattt ttagtagaga
2761 cggggtttca ccatgttggc caggctggtc ttgaactctt gacctcatgt agtccacccg
2821 cctctgcctc ccaaagtgct gcgattacag gcgtgagcca ccgtgcccgg cagagaaaaa
2881 ctgcttaagg ttgaaaagag aaatttaaga aattgctgac ggaataaaaa cataatagaa
2941 ctacaacacc gaaggaaatg aaagaagcaa gaaggaaagc accagaagtg atttggaaga
3001 gaaatcctaa aatgaatgtg aacaacagag tgatcagaag agtgtaggga attaatagtt
3061 tctttaaaca agccatctca caatggaagc ctgtgtgtct tgaaattgct gtggttatta
3121 ttcactctgc cctttgaaga actgcagaaa ttcatagggc aatgttaagt gtttgtgtct
3181 ccaaaaaaga tgttggagtc gttaccctca gaacctcagg taatcatgtt agttaatcca
3241 ttaggttagt tcctaattga ctatgactgt gtccttagaa aaatgggaaa tttggtcaca
3301 gaggcagatg tacagaggga agacgatgtg aagacacagg aagaacatct tcaagccaag
3361 gaacacacgg ggctaccaga agccgagata gaagcatgga acatatgttc tagtaagaag
3421 tgtctgggtt gttttggttt tttttctttg gagtttttgt ggtattaaat tatttttaaa
3481 ttatgtttta ttgtagacct cacaattctt ttttttcttt ttcactcaaa ctacagcaaa
3541 atattatatt tctatcctat atttcatggg cttacctcta gccaattgtt tttaactgcc
3601 atgtaatatt ttacatcatg aagctttcat ccttgattca aatcctctga ttatggacat
3661 gtatttcctc cattttcctg ctatgaaata tatcaccacc agcttgattc aaccttaaaa
3721 ataaggtcat cagtattatg ttctaaataa acttatggcc atacatgaga aatgtacctt
3781 gcagctgaat ggctaggtca tatggtgatc tagtatgtaa ctggaattat gttatacatt
3841 gcccttcctc tcccataaga tggacaaaag tgtttctgta tcactgtgtc ccagacaata
3901 tttagaatta cccagctttc cagtttttac tttagaagtt taaagtgata tagaatatat
3961 ctggtatttc tcatattgaa atacatttga acattagttc atatcctttc attgcctttt
4021 gtttttcctc ttctgtcaat ggtctactca tatgttggcc tgtctttatt tgtatcttga
4081 ctttttattg tgtattttgt ttatggtggg gtactttatt ggtgattaat acgattttca
4141 agtatattat atgggctagt cccttgatac tattgacact gtatttatct tcagtctctt
4201 gttggtatct aactttggtt ctgaagttta tggaatggaa gtatttaatt ggaaagatta
4261 aacatattga ttttaattaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4321 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//