LOCUS BC053856 3322 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinoblastoma binding protein 5, mRNA (cDNA clone
MGC:61473 IMAGE:5576406), complete cds.
ACCESSION BC053856
VERSION BC053856.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3322)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3322)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: f Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 53759147.
FEATURES Location/Qualifiers
source 1..3322
/db_xref="H-InvDB:HIT000053994"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61473 IMAGE:5576406"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3322
/gene="RBBP5"
/gene_synonym="RBQ3"
/db_xref="GeneID:5929"
/db_xref="HGNC:HGNC:9888"
/db_xref="MIM:600697"
CDS 121..1737
/gene="RBBP5"
/gene_synonym="RBQ3"
/codon_start=1
/product="retinoblastoma binding protein 5"
/protein_id="AAH53856.1"
/db_xref="GeneID:5929"
/db_xref="HGNC:HGNC:9888"
/db_xref="MIM:600697"
/translation="MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCN
DGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQ
RFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFD
RRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTA
DRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHAL
YIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAP
DFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEVDVTSVDPIAAFCSSDEE
LEDSKALLYLPIAPEVEDPEENPYGPPPDAVQTSLMDEGASSEKKRQSSADGSQPPKK
KPKTTNIELQGVPNDEVHPLLGVKGDGKSKKKQAGRPKGSKGKEKDSPFKPKLYKGDR
GLPLEGSAKGKVQAELSQPLTAGGAISELL"
BASE COUNT 923 a 680 c 796 g 923 t
ORIGIN
1 gtcttcggag cttgcgccag tctcttcgcg gcgtccacca cttagacgca agttgctgaa
61 gccggccggg gagaaggtgt tgttgccgga gctgagaccg ggcggccaca gtccgcaggg
121 atgaacctcg agttgctgga gtcctttggg cagaactatc cagaggaagc tgatggaact
181 ttggattgta tcagcatggc tttgacttgc acctttaaca ggtggggcac actgcttgca
241 gttggctgta atgatggccg aattgtcatc tgggatttct tgacaagagg cattgctaaa
301 ataattagtg cacacatcca tccagtgtgt tctttatgct ggagccgaga tggtcataaa
361 ctcgtgagtg cttccactga taacatagtg tcacagtggg atgttctttc aggcgactgt
421 gaccagaggt ttcgattccc ttcacccatc ttaaaagtcc aatatcatcc acgagatcag
481 aacaaggttc tcgtgtgtcc catgaaatct gctcctgtca tgttgaccct ttcagattcc
541 aaacatgttg ttctgccagt ggacgatgac tccgatttga acgttgtggc atcttttgat
601 aggcgagggg aatatattta tacgggaaac gcaaaaggca agattttggt cctaaaaaca
661 gattctcagg atcttgttgc ttccttcaga gtgacaactg gaacaagcaa taccacagcc
721 attaagtcaa ttgagtttgc ccggaagggg agttgctttt taattaacac ggcagatcga
781 ataatcagag tttatgatgg cagagaaatc ttaacatgtg gaagagatgg agagcctgaa
841 cctatgcaga aattgcagga tttggtgaat aggaccccat ggaagaaatg ttgtttctct
901 ggggatgggg aatacatcgt ggcaggttct gcccggcagc atgccctgta catctgggag
961 aagagcattg gcaacctggt gaagattctc catgggacga gaggagaact cctcttggat
1021 gtagcttggc atcctgttcg acccatcata gcatccattt ccagtggagt ggtatctatc
1081 tgggcacaga atcaagtaga aaactggagt gcatttgcac cagacttcaa agaattggat
1141 gaaaatgtag aatacgaaga aagggaatca gagtttgata ttgaagatga agataagagt
1201 gagcctgagc agacaggggc tgatgctgca gaagatgagg aagtggatgt caccagcgtg
1261 gaccctattg ctgccttctg tagcagtgat gaagagctgg aagattcaaa ggctctattg
1321 tatttaccca ttgcccctga ggtagaagac ccagaagaaa atccttacgg ccccccaccg
1381 gatgcagtcc aaacctcctt gatggatgaa ggggctagtt cagagaagaa gaggcagtcc
1441 tcagcagatg ggtcccagcc acctaagaag aaacccaaaa caaccaatat agaacttcaa
1501 ggagtaccaa atgatgaagt ccatccacta ctgggtgtga agggggatgg caaatccaag
1561 aagaagcaag caggccggcc taaaggatca aaaggtaaag agaaagattc tccatttaaa
1621 ccgaaactct acaaagggga cagaggttta cctctggaag gatcagcgaa gggtaaagtg
1681 caggcggaac tcagccagcc cttgacagca ggaggagcaa tctcagaact gttatgaaga
1741 ccttcgaagt tcttcattct ttctcacttt gccatcatgt ggcctctgga cactgtggtc
1801 agtcatttga aaattgactt taatttaaaa caaaggcctg tgcctcccac ccaggaggtg
1861 ggagggtgaa ttttatgttt aaatgaagaa gtgaattatg gaagaagagt atacgacctt
1921 cccttccctt tcaagcataa gtccaaatag actctcagga atgaagattt gtgaagacat
1981 cagataggaa ttttgactca tttaaacttt gatgcttagt tatgttgctg gagaaaagat
2041 acttatgttt tgctcatcta acttcattgt acccagcgtc attttgacat gtcatttcct
2101 atctcccatt tgccttcggt cctcaatgca tgtctttgag tgacttctta tctgaaattt
2161 tgctactggt atcctaggaa agcttttgtt ggatactctc attttaaact tctcctctcc
2221 ccagatacct cctatatttc catattgtgt gcaaaggatg ggcagaaaag aaagtgcttg
2281 aaagatttca aattttcaga aagggaacaa cgaaggccct ctcttcctct cataccacgt
2341 tttgctcaag aagctgggct gtaacaattc agggttttcc cttgttttcc tctcattgca
2401 tgtttccctc caatattggt tcattgtcat caatcatggt ttttgaagat agctagtttt
2461 atccatctcc agcaaagaat catcaatagt ttatattgct ttacctgtgc tggcttccag
2521 agatggaaac aaacccaggt gtctctcaac aagctacttt tttactgggg tgggggaatc
2581 tatgcaagga gtaaagtaaa accatccaga atcaaagcag caaccacata gttcaaatca
2641 aagatcaagg tgaatttttt gtatcactgc ctgtggaaat ctatcctcat cagtcattgc
2701 atttttccct gcctatacct gtgctccttt ttcttactgt gttttcagtc acttcctttc
2761 tgtgaaaggt tgcttagctt tttttttgac atttgttgtt ctttataaaa ataacagatt
2821 ggatagatgt gtacatttgg tgtttgaaat tctctgaaaa tcccattagg aaaccaggtg
2881 tgaaaagggc tcagtagctt ctctgagtgg cgtttttagc tgactggaag tgcttaatct
2941 ggatcgtctt tttttttttt ttttttttca atattttaaa aggagaattt aaatactgtg
3001 cttactgtga aatatatcag ttggtgagcc gggcgtggtg ggtcacgcct gtaatcccag
3061 cactttggga ggccaaggcg ggttgatcac ccgaggtcag gagttcaaga ccagcctggc
3121 caacgtggtg aaagcctgta tctattaaaa gacaaaaatt agctgggcgt ggtagtacat
3181 gcctgtaatc ccagctacac tggaggctga gtcaggagaa tcacttgaac gtgggaggca
3241 gaggttgcag tgagtggaga tcgcaccact gccctccagc ctaggtgaca gaatgagact
3301 ctatctcaaa aaaaaaaaaa aa
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