LOCUS BC053838 1595 bp mRNA linear HUM 06-JUN-2005
DEFINITION Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B, mRNA (cDNA clone IMAGE:5471050), complete cds.
ACCESSION BC053838
VERSION BC053838.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1595)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1595)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: e Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922357
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1595
/db_xref="H-InvDB:HIT000053985"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5471050"
/tissue_type="Skin, melanoma, amelanotic"
/clone_lib="NIH_MGC_41"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1595
/gene="PRPF38B"
/gene_synonym="FLJ10330"
/db_xref="GeneID:55119"
CDS 269..841
/gene="PRPF38B"
/gene_synonym="FLJ10330"
/codon_start=1
/product="PRPF38B protein"
/protein_id="AAH53838.1"
/db_xref="GeneID:55119"
/translation="MANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGKQG
NVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKG
SRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL
GFMYIRYTQPPTDLWDWFESFLDDEEFFTL"
BASE COUNT 426 a 383 c 375 g 411 t
ORIGIN
1 ggcagttggc ggaagagatc gagctccctg gctgccggct cgccttctgc gtggagttct
61 cgcggtctgg gtttcgctgt ctgctcttgg cccggggtca ttttgtcggc gtcgggtgcc
121 ctctcttgcc cagctggggc acagcgaggc ggccccttct cccgacgacg ttcgatggag
181 tagggtccca gaccgttgtc ccgaagagcg agatcgagct tggccccctc ccccccctcc
241 ttccctccct ccttccttcc gccgcaacat ggctaacaac agccccgcgc tgacaggcaa
301 ctcgcagccg cagcaccagg cggctgcagc tgcggctcag caacagcagc agtgcggcgg
361 cggcggcgct accaagccgg cggtctccgg caagcagggc aatgtgctcc cgctctgggg
421 caacgagaag accatgaacc tcaaccccat gatcctgacc aacatcctgt cgtcgcctta
481 cttcaaagta cagctctacg agctcaagac ctaccacgag gtggtggacg agatctactt
541 taaggtcacg cacgttgaac catgggagaa aggaagcagg aaaacagcgg gccagacagg
601 gatgtgcgga ggggttcgag gtgttggaac aggaggaatt gtttctacag cattttgcct
661 gttatacaaa ttatttaccc tgaagttaac tcgaaagcaa gtgatgggtc ttataacaca
721 cacagactct ccatatatta gagcgcttgg atttatgtat ataagatata cacagccccc
781 tacagatctg tgggactggt ttgaatcctt ccttgatgat gaagagttct tcaccctcta
841 gcttcttcca aatatcagta ttcccacttg catagaagtg cagaattgaa gagttgggtg
901 ttacataaat aggctaagtg tttggatgac ttgttcaagg tgacaaaatt ttaattccag
961 ttttctgact cctagtacac cacacacacc tttaaaaaag aaatttttta aattgtaatt
1021 cgagtctccc taatttgaaa tctgaaatac taagttagat ttaaatcgtg tatgcattgg
1081 ctgggcgtgg tggctcacat tgtaatccca acacttcgag agttcaagac cagcctgagc
1141 aatatagtga gacctcatct ctacaaaaaa aagtttaaaa attagctgag catagaggta
1201 tgcatcttag tcccacctac ttgggaggct ggggtgggag gatcacttga gcccaggaga
1261 cagaatttgc tgtgagccaa gatcattgcc actgcattcc agcctgggta acacagtaag
1321 accctttctc aaaacaaaac aaaatatcat atatgcatta atttacttgc atggtgaagt
1381 ccaacatgtc aaaaatgaaa tgatgagctg tattgtccct atgtctaccc agtctactac
1441 tttgtgtttt aaggttcata agactttttg agtgctatgt gtcagtagtc tatttacaga
1501 gttcatccaa agaatttatt gaattaaagg atggttctaa tggaaatcta ttgtgttttg
1561 ttattacatg cacacctaaa aaaaaaaaaa aaaaa
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