LOCUS BC053689 3105 bp mRNA linear HTC 19-NOV-2003
DEFINITION Homo sapiens hyaluronan and proteoglycan link protein 3, mRNA (cDNA
clone IMAGE:5212427), with apparent retained intron.
ACCESSION BC053689
VERSION BC053689.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3105)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3105)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: d Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3105
/db_xref="H-InvDB:HIT000259343"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5212427"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 604 a 898 c 901 g 702 t
ORIGIN
1 cagactgctg ccttggaccg ggacagctcg cggcccccga gagctctagc cgtcgaggag
61 ctgcctgggg acgtttgccc tggggcccca gcctggcccg ggtcaccctg gcatgaggag
121 atgggcctgt tgctcctggt cccgttgctc ctgctgcccg gctcctacgg actgcccttc
181 tacaacggct tctactactc caacagcgcc aacgaccaga acctaggcaa cggtcatggc
241 aaagacctcc ttaatggagt gaagctggtg gtggagacac ccgaggagac cctgttcacc
301 taccaagggg ccagtgtgat cctgccctgc cgctaccgct acgagccggc cctggtctcc
361 ccgcggcgtg tgcgtgtcaa atggtggaag ctgtcggaga acggggcccc agagaaggac
421 gtgctggtgg ccatcgggct gaggcaccgc tcctttgggg actaccaagg ccgcgtgcac
481 ctgcggcagg acaaagagca tgacgtctcg ctggagatcc aggatctgcg gctggaggac
541 tatgggcgtt accgctgtga ggtcattgac gggctggagg atgaaagcgg tctggtggag
601 ctggagctgc ggggatgggg ctgtgtgtcc tcacatctct cccacatgtt agggaggcag
661 ttcggggata gaggaaggtg acctgacttt agccccagcc cgtcccagct atgacatgtg
721 ggtaaatgcc tcatccccct tagagccctg ggcctctcag gtgtaaaatg gggtatcaca
781 atctttcctc ctttacctcc ctcagaggca atgaggataa gatgtatgtc cttaaaatgc
841 gttctctgtc tttgccacca gtgtccacat ggcttacatg gtggctcaga ggggccgcat
901 tcctcattct tgaagttggg gtggcagtgg agttggggag aacctgcaag agtcattggt
961 ctggggtctg caggggcagc ctagagaaac agggagccct caccccattc ccggggcttc
1021 aagggctagg aatttggggt ggaaccaggc atgaaatagt ccccctgcaa acacacgtag
1081 aggctgcaag ctgactgtca gggcccatgg gcttctctgc cgcccaacct ggctttgccc
1141 aggtgcctgg cttccggccc tggtgagatc ggaggtttgg ggctcaggct gttcctgggt
1201 ccttggccac acggaggaga ttccaaagtg tccttcccag acccctaggg tcacctccac
1261 tccctaaggt ttcattgact tggtagagac tacatctcag aagtttaaaa actttttatt
1321 agagtaaaat ttcaaacacg aacatatctt ttcagggcct gtggcctcta tcagaccctg
1381 accacaagga gagaaaccgc ctgccccaga cctccctgcc cttgagcctc ctttatggaa
1441 ggcccttccc caaccctctc cccacggcct ctagggcctc tccttctcct gaaaatcatc
1501 tgccacacgt ggaaagttcc ttgcattttc ctaggaaatt tccacattca taataacgta
1561 gacgatcggg tcccagctaa cgagtgggga gctgggagtc aaacctggcc cctagagccc
1621 aaagcccggg cctgtctgga gaagatggca cagcctcact gggggtctgg cgacagcctt
1681 gcggattagg ttggggacat tgttggggac attaatggac taattaatta ccttaactca
1741 tggatgtttt ctgagtactg ctgtgaacca gctgagtccc aggagagagg cggcaacgga
1801 caggaggtgt ggtctttcct taccagtccc ccaacgggcg ctaccagttc aacttccacg
1861 agggccagca ggtctgtgca gagcaggctg cggtggtggc ctcctttgag cagctcttcc
1921 gggcctggga ggagggcctg gactggtgca acgcgggctg gctgcaggat gccacggtgc
1981 agtaccccat catgttgccc cggcagccct gcggtggccc gggcctggca cctggcgtgc
2041 gaagctacgg cccccgccac cgccgcctgc accgctatga tgtattctgc ttcgctactg
2101 ccctcaaggg gcgggtgtac tacctggagc accctgagaa gctgacgctg acagaggcaa
2161 gggaggcctg ccaggaagat gatgccacga tcgccaaggt gggacagctc tttgccgcct
2221 ggaagttcca tggcctggac cgctgcgacg ctggctggct ggcagatggt agcgtccgct
2281 accctgtggt tcacccgcat cctaactgtg ggcccccaga gcctggggtc cgaagctttg
2341 gcttccccga cccgcagagc cgcttgtacg gtgtttactg ctaccgccag cactaggacc
2401 tggggccctc ccctgccgca ttccctcact ggctgtgtat ttattgagtg gttcgttttc
2461 ccttgtgggt tggagccatt ttaactgttt ttatacttct caatttaaat tttctttaaa
2521 cattttttta ctattttttg taaagcaaac agaacccaat gcctcccttt gctcctggat
2581 gccccactcc aggaatcatg cttgctcccc tgggccattt gcggttttgt gggcttctgg
2641 agggttcccc gccatccagg ctggtctccc tcccttaagg aggttggtgc ccagagtggg
2701 cggtggcctg tctagaatgc cgccgggagt ccgggcatgg tgggcacagt tctccctgcc
2761 cctcagcctg ggggaagaag agggcctcgg gggcctccgg agctgggctt tgggcctctc
2821 ctgcccacct ctacttctct gtgaagccgc tgaccccagt ctgcccactg aggggctagg
2881 gctggaagcc agttctaggc ttccaggcga aagctgaggg aaggaagaaa ctcccctccc
2941 cgttcccctt cccctctcgg ttccaaagaa tctgttttgt tgtcatttgt ttctcctgtt
3001 tccctgtgtg gggaggggcc ctcaggtgtg tgtactttgg acaataaatg gtgctatgac
3061 tgccttccgc caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//