LOCUS BC053350 2006 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 3 regulator 1, mRNA (cDNA clone MGC:61480 IMAGE:5218414),
complete cds.
ACCESSION BC053350
VERSION BC053350.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2006)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2006)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: e Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4759139.
FEATURES Location/Qualifiers
source 1..2006
/db_xref="H-InvDB:HIT000053881"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61480 IMAGE:5218414"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2006
/gene="SLC9A3R1"
/gene_synonym="EBP50"
/gene_synonym="NHERF"
/db_xref="GeneID:9368"
/db_xref="HGNC:HGNC:11075"
/db_xref="MIM:604990"
CDS 196..1272
/gene="SLC9A3R1"
/gene_synonym="EBP50"
/gene_synonym="NHERF"
/codon_start=1
/product="solute carrier family 9 (sodium/hydrogen
exchanger), member 3 regulator 1"
/protein_id="AAH53350.1"
/db_xref="GeneID:9368"
/db_xref="HGNC:HGNC:11075"
/db_xref="MIM:604990"
/translation="MSADAAAGAPLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEP
GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQLQKL
GVQVREELLRAQEAPGQAEPPAAAEVQGAGNENEPREADKSHPEQRELRPRLCTMKKG
PSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA
IRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEA
ALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAMAKERA
HQKRSSKRAPQMDWSKKNELFSNL"
BASE COUNT 435 a 625 c 586 g 360 t
ORIGIN
1 gtctgtggtc ctctctcggc tcctcgcggc tcgcggcggc cgacggttcc tgggacacct
61 gcttgcttgg cccgtccggc ggctcagggc ttctctgctg cgctcccggt tcgctggacg
121 ggaagaaggg ctgggccgtc ccgtcccgtc cccatcggaa ccccaagtcg cgccgctgac
181 ccgtcgcagg gcgagatgag cgcggacgca gcggccgggg cgcccctgcc ccggctctgc
241 tgcctggaga agggtccgaa cggctacggc ttccacctgc acggggagaa gggcaagttg
301 ggccagtaca tccggctggt ggagcccggc tcgccggccg agaaggcggg gctgctggcg
361 ggggaccggc tggtggaggt gaacggcgaa aacgtggaga aggagaccca ccagcaggtg
421 gtgagccgca tccgcgccgc actcaacgcc gtgcgcctgc tggtggtcga ccccgagacg
481 gacgagcagc tgcagaagct cggcgtccag gtccgagagg agctgctgcg cgcccaggaa
541 gcgccggggc aggccgagcc gccggccgcc gccgaggtgc agggggctgg caacgaaaat
601 gagcctcgcg aggccgacaa gagccacccg gagcagcgcg agcttcggcc tcggctctgt
661 accatgaaga agggccccag tggctatggc ttcaacctgc acagcgacaa gtccaagcca
721 ggccagttca tccggtcagt ggacccagac tccccggctg aggcttcagg gctccgggcc
781 caggatcgca ttgtggaggt gaacggggtc tgcatggagg ggaagcagca tggggacgtg
841 gtgtccgcca tcagggctgg cggggacgag accaagctgc tggtggtgga cagggaaact
901 gacgagttct tcaagaaatg cagagtgatc ccatctcagg agcacctgaa tggtcccctg
961 cctgtgccct tcaccaatgg ggagatacag aaggagaaca gtcgtgaagc cctggcagag
1021 gcagccttgg agagccccag gccagccctg gtgagatccg cctccagtga caccagcgag
1081 gagctgaatt cccaagacag ccccccaaaa caggactcca cagcgccctc gtctacctcc
1141 tcctccgacc ccatcctaga cttcaacatc tccctggcca tggccaaaga gagggcccac
1201 cagaaacgca gcagcaaacg ggccccgcag atggactgga gcaagaaaaa cgaactcttc
1261 agcaacctct gagcgccctg ctgccaccca gtgactggca gggccgagcc agcattccac
1321 cccacctttt tccttctccc caattactcc cctgaatcaa tgtacaaatc agcacccaca
1381 tcccctttct tgacaaatga tttttctaga gaactatgtt cttccctgac tttagggaag
1441 gtgaatgtgt tcccgtcctc ccgcagtcag aaaggagact ctgcctccct cctcctcact
1501 gagtgcctca tcctaccggg tgtccctttg ccaccctgcc tgggacatcg ctggaacctg
1561 caccatgcca ggatcatggg accaggcgag agggcaccct cccttcctcc cccatgtgat
1621 aaatgggtcc agggctgatc aaagaactct gactgcagaa ctgccgctct cagtggacag
1681 ggcatctgtt accctgagac ctgtggcaga cacgtcttgt tttcatttga tttttgttaa
1741 gagtgcagta ttgcagagtc tagaggaatt tttgtttcct tgattaacat gattttcctg
1801 gttgttacat ccagggcatg gcagtggcct cagccttaaa cttttgttcc tactcccacc
1861 ctcagcgaac tgggcagcac ggggagggtt tggctacccc tgcccatccc tgagccaggt
1921 accaccattg taaggaaaca ctttcagaaa ttcagctggt tcctccaaaa aaaaaaaaaa
1981 aaaaaaaaaa aaaaaaaaaa aaaaaa
//