LOCUS BC053224 1207 bp mRNA linear VRT 15-JUL-2006
DEFINITION Danio rerio zgc:64050, mRNA (cDNA clone MGC:64050 IMAGE:6793742),
complete cds.
ACCESSION BC053224
VERSION BC053224.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1207)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1207)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Leonard I. Zon, M.D.
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 117 Row: i Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31418884.
FEATURES Location/Qualifiers
source 1..1207
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:64050 IMAGE:6793742"
/tissue_type="Kidney, zebrafish"
/clone_lib="NCI_CGAP_ZKid1"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..1207
/gene="zgc:64050"
/gene_synonym="fa96c11"
/gene_synonym="fc08a11"
/gene_synonym="wu:fa96c11"
/gene_synonym="wu:fc08a11"
/db_xref="GeneID:406432"
/db_xref="ZFIN:ZDB-GENE-040426-2178"
CDS 160..729
/gene="zgc:64050"
/gene_synonym="fa96c11"
/gene_synonym="fc08a11"
/gene_synonym="wu:fa96c11"
/gene_synonym="wu:fc08a11"
/codon_start=1
/product="zgc:64050"
/protein_id="AAH53224.1"
/db_xref="GeneID:406432"
/db_xref="ZFIN:ZDB-GENE-040426-2178"
/translation="MACGATLKRSMEFEALLSPQSPKRRRCNPLPGTPTTPSPQRCSL
RPSTESPAHSMSPQSMGGEHRLTPEQIFQNIRQEYSRYQRRRQLEGAFNQTEPCSSTD
IQSSSPALTSPSSPTGASSLKKDQPLFTLRQVGYLCERLIKDHEEKMREEYEQILNTK
LAEQYESFVKFTQDQIMRRYGARPASYVS"
BASE COUNT 350 a 281 c 245 g 331 t
ORIGIN
1 ccggtgtgcg atcgtagggg gagccttcga tttcgtacga agctccgttt aaaaaaactg
61 ttataaagtc agtttacaaa gggaattcga cgcgttttac caactaaacg ctgttgtttt
121 accgtctgat ttgtttattg tgttgttaaa taaacgatca tggcttgtgg cgcgacgttg
181 aagcgatcta tggagtttga ggcccttctc agcccgcagt cccccaagcg gaggaggtgc
241 aatcctctac cggggactcc gactactcct tccccgcaga ggtgcagtct tcgtccgtca
301 acagagagcc cagcacactc gatgtcgcct cagtctatgg gtggagagca caggctaacc
361 ccagagcaga tcttccagaa cattcgtcag gagtacagtc gctatcagag gcgacgacag
421 ttggaagggg cctttaacca gaccgagccc tgcagctcca ccgatatcca gagctccagt
481 cccgccctta cctcccccag ttctcccaca ggtgcctcat cattgaagaa ggatcagcca
541 ctgttcacac tgaggcaggt tggctatttg tgtgagcgcc ttatcaaaga tcacgaggag
601 aagatgcgtg aagagtacga acaaatactg aacacaaagc ttgcagaaca atacgagtcc
661 ttcgtgaaat tcacacagga tcagattatg cgaagatatg gtgccaggcc tgcaagctat
721 gtgtcttgaa gaacattata gatggtactt gccatccctc agcagctggt tgctacagaa
781 ccagcttcct ttgtttcact tgaaatttcc tccattcttt tgattctatt tttttctcct
841 ttaaaatgct tgggtgccat gttctatcca catttaactc atttttattg ctgaactgtt
901 actgatggcc caacaccaaa catgcatatc tagatgcatt ctaagaaggt ttaatctctt
961 taagaatttc tgagaaaaga tgtcaactat cgctgtaaaa agcttgactg atgcgatcat
1021 ctctgtataa tgtaacgtga ctgatctgca gcagatttac ctgactctcc ctctatcctt
1081 cggtctgttt ttttaactct tcacctcctt ttttttcttt ttttgacaaa taaaatatct
1141 gtgataagtc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1201 aaaaaaa
//