LOCUS BC052979 3258 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens ephrin-B1, mRNA (cDNA clone MGC:60068 IMAGE:6164440), complete cds. ACCESSION BC052979 VERSION BC052979.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3258) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3258) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-JUN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 110 Row: l Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31317225. FEATURES Location/Qualifiers source 1..3258 /db_xref="H-InvDB:HIT000053851" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:60068 IMAGE:6164440" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3258 /gene="EFNB1" /gene_synonym="CFND" /gene_synonym="EFL3" /gene_synonym="Elk-L" /gene_synonym="LERK2" /gene_synonym="MGC8782" /db_xref="GeneID:1947" /db_xref="HGNC:HGNC:3226" /db_xref="MIM:300035" CDS 800..1840 /gene="EFNB1" /gene_synonym="CFND" /gene_synonym="EFL3" /gene_synonym="Elk-L" /gene_synonym="LERK2" /gene_synonym="MGC8782" /codon_start=1 /product="ephrin-B1" /protein_id="AAH52979.1" /db_xref="GeneID:1947" /db_xref="HGNC:HGNC:3226" /db_xref="MIM:300035" /translation="MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKF LSGKGLVIYPKIGDKLDIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCN RPEQEIRFTIKFQEFSPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKI IMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKS GPGASGGSSGDPDGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQR AAALSLSTLASPKGGSGTAGTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEM PPQSPANIYYKV" BASE COUNT 643 a 991 c 1011 g 613 t ORIGIN 1 ctgagcaagg gagtagacag cacagcggca gcggagggag tctatgcgag ctggacagca 61 gtgggaggtt tgtgaggctc gcactggccg cagaccctcg ggctcgatcg cccgggagcc 121 aggactcggc gacgcgaggc tgccgggcta cccggccgag gcttcggggg cgcaaactaa 181 tgggactggc tcgctcggca gcatctcccc gctcttctaa gtacactgag cagggcccgc 241 gctgaagtag aagctgtccg ggggcgcgta gcccggagtc ccagtgtggc ccggaggaac 301 ggagcccgtg ccagggcggc ccagtcggga gcccggggac cgagcttgtg ctgtggggaa 361 acccccactt cttccaaggg acagcgatcc cgggacggtc gaggcgtcgg ggcggtcacc 421 gagacctctg cgggaagacc ccgtcgggga gagggcgcgc agccccgaag cgtctcggga 481 agtcgagcgg aatcgggcgg gatcacccgg gggcgcagag cccccgtcgc gcctcgtgcg 541 gcagcggaga gcccaggaga acgagccctc gggggccgaa gcccatgccc gggttggggg 601 cggctgccca gtgagtcctc ctggccggcc gggcggagaa gagcgacacc gaagccggcg 661 ggaggggagc acttcaaggc cggcggctgc ggaggatggg cgcctgagcg gctccgagcg 721 cagcgcggca gaggaaggcg aggcgagctt tggtgaggag gcgccaaggg atcccgaagt 781 gcagtctgcc cccgggaaga tggctcggcc tgggcagcgt tggctcggca agtggcttgt 841 ggcgatggtc gtgtgggcgc tgtgccggct cgccacaccg ctggccaaga acctggagcc 901 cgtatcctgg agctccctca accccaagtt cctgagtggg aagggcttgg tgatctatcc 961 gaaaattgga gacaagctgg acatcatctg cccccgagca gaagcagggc ggccctatga 1021 gtactacaag ctgtacctgg tgcggcctga gcaggcagct gcctgtagca cagttctcga 1081 ccccaacgtg ttggtcacct gcaataggcc agagcaggaa atacgcttta ccatcaagtt 1141 ccaggagttc agccccaact acatgggcct ggagttcaag aagcaccatg attactacat 1201 tacctcaaca tccaatggaa gcctggaggg gctggaaaac cgggagggcg gtgtgtgccg 1261 cacacgcacc atgaagatca tcatgaaggt tgggcaagat cccaatgctg tgacgcctga 1321 gcagctgact accagcaggc ccagcaagga ggcagacaac actgtcaaga tggccacaca 1381 ggcccctggt agtcggggct ccctgggtga ctctgatggc aagcatgaga ctgtgaacca 1441 ggaagagaag agtggcccag gtgcaagtgg gggcagcagc ggggaccctg atggcttctt 1501 caactccaag gtggcattgt tcgcggctgt cggtgccggt tgcgtcatct tcctgctcat 1561 catcatcttc ctgacggtcc tactactgaa gctacgcaag cggcaccgca agcacacaca 1621 gcagcgggcg gctgccctct cgctcagtac cctggccagt cccaaggggg gcagtggcac 1681 agcgggcacc gagcccagcg acatcatcat tcccttacgg actacagaga acaactactg 1741 cccccactat gagaaggtga gtggggacta cgggcaccct gtctacatcg tccaagagat 1801 gccgccccag agcccggcga acatctacta caaggtctga gtgcctggca cggcctcagg 1861 cccccgaggg acagtcggcc tggaccggac ctctcctttc gcccccacac cccctcccct 1921 tgccagctgt gcccaccttt gtatttagtt ttgtagtttc ttggctttta taatccccct 1981 ttttccctgc cccctgggct tcggaggggg gtgcttgtgc ccctaacccc catgctcttg 2041 tgccttcccc ctctggccag gcctctgggc tccgtggggg cgccccttct tggaaggcag 2101 ggctggacac tgatggacag caggcaggga gacagtcccc tggccctgcc cctccctcgc 2161 cccccttgcc accttcccag gactgcttgt ccgctatcat cactgttttt aatgcttttg 2221 tgttcatttt ttagctgtca actcattttc atctgttttt tgaagaaaaa tggaaaaatg 2281 taaaaggcag cccctcccca ggctttgtga gcctggccca agccagtaca agagggcctg 2341 gggcacgatg tggtcagcca ggaagcatag gatgccattt cttttataga ttccttggta 2401 tttctggtgg ggtaaggggc aggccagggc tgttcacgcc catgagggaa gaggaaagtg 2461 ccactgggca aggtgtccca ccctcccctc ctgaccctcc tacgaggctt atcctggcaa 2521 tggggtagtc actgccaccc ttccacacac acacacacac acacacacac acacacaaaa 2581 atcccttcct tgtgggattc ttgggcatct cctgcctccc tcactctcac ggtaattaat 2641 gtcttaattg gctgttgcct ggggaacagg agagctgctg caggcagatg acctcatggg 2701 gggtggaggg aggtgaggtg cccaggtggc tatttgccct gcagagctgg gagtttcacc 2761 cccacccccc accctgttct ctccttacct ttggcatcct ttggcctggt ggggaaacag 2821 aggcccaggg tggagaccta agcgggtata agaccaggtg gcctgctcct tttctgggcc 2881 ctagcacagg tgggtaaccc ccacccaacc cagctcctgc tgctgtccca gtcttgggct 2941 ggggcctgga aagaggaaga ggctgcctgg ggctgggcca gcccgctgtg cactttgacc 3001 ccagttcctt gccagcacgg ctgctaacag actgccactt gagtgcgcct tgcaggcact 3061 cccagagcag ccatggaagg agctggccct cacaccatcc acctccacac tgcctcctgg 3121 ccagctgccc accccagtgc caggtgggag agggagcaga acagccagcc ccttccaggt 3181 ggcagtcgga agggtttttg tttttgtttc tgttgccatt tgtgtaaata ctagtctttt 3241 tggaaaaaaa aaaaaaaa //