LOCUS BC052800 2487 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 18 (brain-derived), mRNA (cDNA clone MGC:59686 IMAGE:5809095), complete cds. ACCESSION BC052800 VERSION BC052800.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2487) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2487) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (27-MAY-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 47 Row: e Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18375654. FEATURES Location/Qualifiers source 1..2487 /db_xref="H-InvDB:HIT000053825" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:59686 IMAGE:5809095" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_99" /lab_host="DH10B" /note="Vector: pOTB7" gene 1..2487 /gene="PTPN18" /gene_synonym="BDP1" /db_xref="GeneID:26469" /db_xref="MIM:606587" CDS 64..1119 /gene="PTPN18" /gene_synonym="BDP1" /codon_start=1 /product="PTPN18 protein" /protein_id="AAH52800.1" /db_xref="GeneID:26469" /db_xref="MIM:606587" /translation="MSRSLDSARSFLERLEARGGREGAVLAGEFSKRCERYWAQEQEP LQTGLFCITLIKEKWLNEDIMLRTLKVTFQKESRSVYQLQYMSWPDRGVPSSPDHMLA MVEEARRLQGSGPEPLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKM RKQRPAAVQTEEQYRFLYHTVAQMFCSTLQNASPHYQNIKENCAPLYDDALFLRTPQA LLAIPRPPGGVLRSISVPGSPGHAMADTYAVVQKRGAPAGAGSGTQTGTGTGARSAEE APLYSKVTPRAQRPGAHAEDARGTLPGRVPADQSPAGSGAYEDVAGGAQTGGLGFNLR IGRPKGPRDPPAEWTRV" misc_feature 157..618 /gene="PTPN18" /gene_synonym="BDP1" /note="PTPc; Region: Protein tyrosine phosphatase, catalytic domain" /db_xref="CDD:smart00194" BASE COUNT 601 a 740 c 714 g 432 t ORIGIN 1 ccgcggcgtc cacactcgcc gcgcgcgcgg cggccgggct ggaccttgct ggcccgcggc 61 gccatgagcc gcagcctgga ctcggcgcgg agcttcctgg agcggctgga agcgcggggc 121 ggccgggagg gggcagtcct cgccggcgag ttcagcaaaa ggtgtgagcg gtactgggcc 181 caggagcagg agccactgca gactgggctt ttctgcatca ctctgataaa ggagaagtgg 241 ctgaatgagg acatcatgct caggaccctc aaggtcacat tccagaagga gtcccgttct 301 gtgtaccagc tacagtatat gtcctggcca gaccgtgggg tccccagcag tcctgaccac 361 atgctcgcca tggtggagga agcccgtcgc ctccagggat ctggccctga acccctctgt 421 gtccactgca gtgcgggttg tgggcgaaca ggcgtcctgt gcaccgtgga ttatgtgagg 481 cagctgctcc tgacccagat gatcccacct gacttcagtc tctttgatgt ggtccttaag 541 atgaggaagc agcggcctgc ggccgtgcag acagaggagc agtacaggtt cctgtaccac 601 acggtggctc agatgttctg ctccacactc cagaatgcca gcccccacta ccagaacatc 661 aaagagaatt gtgccccact ctacgacgat gccctcttcc tccggactcc ccaggcactt 721 ctcgccatac cccgcccacc aggaggggtc ctcaggagca tctctgtgcc cgggtccccg 781 ggccacgcca tggctgacac ctacgcggtg gtgcagaagc gcggggctcc agcgggcgcc 841 gggagtggga cgcagacggg gacggggacg ggggcgcgca gcgcggagga ggcgccgctc 901 tacagcaagg tgacgccgcg cgcccagcga cccggggcgc acgcggagga cgcgaggggg 961 acgctgcctg gccgcgttcc tgctgaccaa agtcctgccg gatctggcgc ctacgaggac 1021 gtggcgggtg gagctcagac cggtgggcta ggtttcaacc tgcgcattgg gaggccgaag 1081 ggtccccggg acccgcctgc tgagtggacc cgggtgtaag tctaacgcca gttcctgcct 1141 gttgcctctt gtgagctcgg actgctgatg ccccggtgct gctgagcgcc gtgcgcagaa 1201 tggaaacagt gggcctggat caaagttaaa gtttctcagg gtgggaaatg tgggggcttt 1261 gccccaatga ctgtagcatt caaggcttga ggctggagga ggtagctagg gtatagtggc 1321 tagtgaggct gcacagagca gattcaagaa agaagatcag gaaggggcat gacccctgag 1381 ttatgaaggg gagaagggac agatgagctt ccggagactg ctctcctcac cacacagcac 1441 tagtccatcc tcagcacctg agcctccctc acttggacac tcaggggacc acacagagaa 1501 gtggatggac acttcgccat ccaggcagaa ctaagccagg cataaccaca gccaagcaga 1561 ttaaccccag gcagaccgat aaaaagacct ccagataggc agacagacag atggaccacc 1621 aacctggaca gacagccaaa gcttcagaga tacagtccac aggtggacaa agggatcccc 1681 agccagagag agagagacca gccaacagct tgatagacca gtgcagccag agagaccacc 1741 aaacacagcc cccaaaagac agacatctct gctagctgga cagccaggtg gaccccctaa 1801 gttagtcaga ttactagaca gatataaaca gatcccctgc tgaacagata tacagagttc 1861 tcagacccca cccccaccct caggtgggct ggctggctga cagaccttct ggccagacag 1921 actcctaacc aaccagatgg actgccagac aggcagacat cagccacatg gaatcctgac 1981 atcccagcca gccggccaga ctctcatctt gatgtcttga tggatggacc ccagctagtc 2041 agacatgatc ctccagattg acagacaagt cccccaaatg agtacacatc tccagctatt 2101 cagacagatg gacccccagc aaatcaggac ctatctaggc agaccccagc cagacccccg 2161 ccagacagac tcccaaccag actgacccct tgctgttcac acagcctgcc gagtagctgg 2221 gactacaggt ctaatttttt ttttttttaa gaaatgagtt tttgccatgt tgcccagact 2281 ggtcttgaac tcccaacctc aagcaatcct cctgcctcag cctcccaaag tgctgagatt 2341 acaggtgtga gccaccaggc tcagccccct aagatttgaa acactttaaa tggcccatgg 2401 tagggttcct gctaggataa aacattaagc ggctgttaaa agaaataaaa ggaggacacg 2461 tctctgtgca aaaaaaaaaa aaaaaaa //