LOCUS BC052612 1466 bp mRNA linear HTC 26-JUN-2007
DEFINITION Homo sapiens cation channel, sperm associated 2 pseudogene 1, mRNA
(cDNA clone IMAGE:6302240), with apparent retained intron.
ACCESSION BC052612
VERSION BC052612.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1466)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1466)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Mark Watson
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: j Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 26051221
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..1466
/db_xref="H-InvDB:HIT000099537"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6302240"
/tissue_type="Spleen"
/clone_lib="NIH_MGC_113"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 355 a 392 c 395 g 324 t
ORIGIN
1 cgtccgcttc cactacaagg ctttgggatg cctagtctgt agactggagg agcattaata
61 ctgactcacg cagaaaagat atagctacat attggactgg gggaaggggt ggcaaaaccc
121 tctgcaaata ggaagtgcca caagagcacc gagataagga tgaggccctg cgtgagcgca
181 gccttcgggt tttccttggg ccgatcagca ccgactcccc cgctctcggc gaggcgcctc
241 cagctcccgg gaatgagaaa tgtgcccgcc gcagcagggg cccacaggaa tgaagggccc
301 cggcgctgcg taggcccaac agttccccgc gctctcgccc ccggcccagc cccgcctttc
361 ttcccccgcc tcggcagaat ggactcacca gggggcgaag aactcgacga gcatgaggcc
421 cgcagagccc gtgtcggaga tgcgactctc gaagttgtcg tccgtgagtt ctagcacgtc
481 ggaggcagcg gcgaggcggg ccgcggcaag aagcagcgcc acacccggga acagcgctag
541 gcggcggagg cgcatggcgg cgagacatgg ccgcttacca acaagaaggg cagatgcagc
601 ttccccgagc tgatgccatt cgttcacgtc tcatcgatac tttctctctc atcgagcatt
661 tgcaaggctt gagccaagct gtgctgcgac acactatcag gagttacttg atccttcccg
721 ccagaagaaa cttatgttgg gagatcaaca ccagctagtg ggcgtctcta taaagcctca
781 acgtatagaa cagatttcac atgcccagag gctgttgagc aggcttcatg tgcgctgcag
841 tcagaggcca cctctttctt tgtgggccgg atgggtcctt gagtgtatcc tttcatgtca
901 ctcattttta tcctggctgt tgatcatctg cctaatgact tattttttgc ttcccaaact
961 ccattgtctc attctcactg cttatgttat tgctcttatt atttcagctg cataaatcag
1021 aaagaactcc actctgtatg tttccttaag agacaacagg tcctctcttc aaaaacttca
1081 tcatcttcct gatctttttg aatacgatcg tactgatggt tgaaatacgt gagaactgac
1141 attgtatgaa agaggaagtg aggccaggcg cggcggctca cacgtgtaat cctagcactg
1201 tgggaggccg aggcaggcgg attgccaaag ctcaggagtt caagaccagc ctgggcaaca
1261 tggtgaaacc ctgtttctac taaaaaatac aaaaaattgg ctgggcgtgg tggcatggcc
1321 tgtagtccca gctactcggg aggctgaggc aggagaatcg cttgaaccca ggaggcgtag
1381 gtttcagtga gctgagattg tgccactgca tttcagcctg ggcgacagag tacaactctg
1441 tctcaaaaaa aaaaaaaaaa aaaaaa
//