LOCUS BC052268 3271 bp mRNA linear HUM 09-MAR-2007
DEFINITION Homo sapiens TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 100kDa, mRNA (cDNA clone MGC:59660
IMAGE:6575596), complete cds.
ACCESSION BC052268
VERSION BC052268.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3271)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3271)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: n Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50363367.
FEATURES Location/Qualifiers
source 1..3271
/db_xref="H-InvDB:HIT000099490"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59660 IMAGE:6575596"
/tissue_type="Prostate, carcinoma"
/clone_lib="NIH_MGC_40"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3271
/gene="TAF5"
/gene_synonym="TAFII100"
/db_xref="GeneID:6877"
/db_xref="HGNC:HGNC:11539"
/db_xref="MIM:601787"
CDS 16..2418
/gene="TAF5"
/gene_synonym="TAFII100"
/codon_start=1
/product="TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 100kDa"
/protein_id="AAH52268.2"
/db_xref="GeneID:6877"
/db_xref="HGNC:HGNC:11539"
/db_xref="MIM:601787"
/translation="MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGP
NGGGGNVAASSSTGGDGGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQ
FLRQSKLREAEEALRREAGLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAA
PDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYY
SGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQ
DDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQ
EHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEE
GENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKR
VRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVK
QASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGT
VRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFA
GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGR
FLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDA
IKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTLRNLVLAAGAYS
PQ"
BASE COUNT 923 a 693 c 802 g 853 t
ORIGIN
1 tggctcagcc gcaagatggc ggcgctggcg gaggagcaga cggaggtggc ggtcaagcta
61 gagcctgagg gaccgccaac gctgctacct ccgcaggcgg gggacggcgc aggcgagggt
121 agcggcggca ctaccaacaa cggccccaac ggcggcggcg ggaacgttgc ggcgtcgtcg
181 tccactggcg gggatggcgg gacccccaag cccacggtgg ctgtctccgc cgctgccccg
241 gcgggggcgg ccccggtgcc cgccgctgct ccggacgccg gcgctccgca tgaccgacag
301 actctactgg ccgtgctgca gttcctacgg cagagcaaac tccgcgaggc cgaagaggcg
361 ctgcgccgtg aggccgggct gctggaggag gcagtggcgg gctccggagc cccgggagag
421 gtggacagcg ccggcgctga ggtgaccagc gcgcttctca gccgggtgac cgcctcggcc
481 cctggccctg cggcccccga ccctccgggc actggcgctt cgggggccac ggtcgtctca
541 ggttcagcct caggtcctgc ggctccgggt aaagttggaa gtgttgctgt ggaagaccag
601 ccagatgtca gtgccgtgtt gtcagcctac aaccaacaag gagatcccac aatgtatgaa
661 gaatactata gtggactgaa acacttcatt gaatgttccc tggactgcca tcgggcagag
721 ttgtcccaac ttttttatcc tctgtttgtg cacatgtact tggagctagt ctacaatcaa
781 catgagaatg aagcaaagtc attctttgag aagttccatg gagatcagga atgttattac
841 caggatgacc tacgagtatt atctagtctt accaaaaagg aacacatgaa agggaatgag
901 accatgttgg attttcgaac aagtaaattt gttctgcgta tttcccgtga ctcgtaccaa
961 ctcttgaaga ggcatcttca ggagaaacag aacaatcaga tatggaacat agttcaggag
1021 cacctctaca ttgacatctt tgatgggatg ccgcgtagta agcaacagat agatgcgatg
1081 gtgggaagtt tggcaggaga ggctaaacga gaggcaaaca aatcaaaggt attttttggt
1141 ttattaaaag aaccagaaat tgaggtacct ttggatgacg aggatgaaga gggagaaaat
1201 gaagaaggaa aacctaaaaa gaagaagcct aaaaaagata gtattggatc caaaagcaaa
1261 aaacaagatc ccaatgctcc acctcagaac agaatccctc ttcctgagtt gaaagattca
1321 gataagttgg ataagataat gaatatgaaa gaaaccacca aacgagtgcg ccttgggccg
1381 gactgcttac cctccatttg tttctataca tttctcaatg cttaccaggg tctcactgca
1441 gtggatgtca ctgatgattc tagtctgatt gctggaggtt ttgcagattc aactgtcaga
1501 gtgtggtcgg taacacccaa aaagcttcgt agtgtcaaac aagcatcaga tcttagtctt
1561 atagacaaag aatcagatga tgtcttagaa agaatcatgg atgagaaaac agcaagtgag
1621 ttgaagattt tgtatggtca cagtgggcct gtctacggag ccagcttcag tccggatagg
1681 aactatctgc tttcctcttc agaggacgga actgttagat tgtggagcct tcaaacattt
1741 acttgtttgg tgggatataa aggacacaac tatccagtat gggacacaca attttctcca
1801 tatggatatt attttgtgtc agggggccat gaccgagtag ctcggctctg ggctacagac
1861 cactatcagc ctttaagaat atttgccggc catcttgctg atgtgaattg taccagattc
1921 catccaaatt ctaattatgt tgctacgggc tctgcagaca gaactgtgcg gctctgggac
1981 gtcctgaatg gtaactgtgt aaggatcttc actggacaca agggaccaat tcattccttg
2041 acattttctc ccaatgggag attcctggct acaggagcaa cagatggcag agtgcttctt
2101 tgggatattg gacatggttt gatggttgga gaattaaaag gccacactga tacagtctgt
2161 tcacttaggt ttagtagaga tggtgaaatt ttggcatcag gttcaatgga taatacagtt
2221 cgattatggg atgctatcaa agcctttgaa gatttagaga ccgatgactt tactacagcc
2281 actgggcata taaatttacc tgagaattca caggagttat tgttgggaac atatatgacc
2341 aaatcaacac cagttgtaca ccttcatttt actctaagaa acctggttct agctgcagga
2401 gcttatagtc cacaataaac catcggtatt aaagaccttt tggaagctac tgtttttaaa
2461 aagggagact aaaagcaaat acctcagtga ttaatattta agctacagag aatgtttttg
2521 tctatatgga tctggaagta tgctgcttgg aaaaatctga acaggacagt tccacgtttc
2581 tatagcaacc acatttgact aatttccgtt agttgaataa gaggtattat gatcatggag
2641 gggacattta tggtgctttg gattgtgtgg aaactatgca ttttctgttc aaatgctatt
2701 ttaatttatt acatttagaa aaaaagttga tttcaataat tcatcctgct tcaagattca
2761 aattcagaaa tatactatca tcttgaattt tagctgaaga atcctatgag catgtatgtt
2821 tctgctgtaa aaacgtagtt actgtatggc actcaaaaac tatgttaaat gatccactaa
2881 cttttttttt cttggcccat gattaatgga atgtatgtaa ctaggtaggg ttcctttctt
2941 agatctagag gaagtacagc cacccactga catctgaatt tatatacctg ttgagttttg
3001 agtgcaccca aacactcgat aaaccaggtg aagaaattta gcttccatgt tctacttcag
3061 ctaaaacagc tacatacaac ctagtacact tgaagtcaga cagacatttc agttgcttac
3121 ctccagtact gagccttgct ttgggaaact aaaagattta gaccaagtca ctgccagttt
3181 ttgcctttgt tgcattttgt acagttttta tatttttgat atcttgtaaa taaagacaac
3241 cagcttttcc aggaaaaaaa aaaaaaaaaa a
//