LOCUS BC052263 4142 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens signal peptide, CUB domain, EGF-like 3, mRNA (cDNA
clone MGC:59874 IMAGE:6379512), complete cds.
ACCESSION BC052263
VERSION BC052263.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4142)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4142)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: l Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377567.
FEATURES Location/Qualifiers
source 1..4142
/db_xref="H-InvDB:HIT000099486"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59874 IMAGE:6379512"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4142
/gene="SCUBE3"
/gene_synonym="FLJ34743"
/db_xref="GeneID:222663"
/db_xref="HGNC:HGNC:13655"
CDS 358..3336
/gene="SCUBE3"
/gene_synonym="FLJ34743"
/codon_start=1
/product="signal peptide, CUB domain, EGF-like 3"
/protein_id="AAH52263.2"
/db_xref="GeneID:222663"
/db_xref="HGNC:HGNC:13655"
/translation="MGSGRVPGLCLLVLLVHARAAQYSKAAQDVDECVEGTDNCHIDA
ICQNTPRSYKCICKSGYTGDGKHCKDVDECEREDNAGCVHDCVNIPGNYRCTCYDGFH
LAHDGHNCLDVDECAEGNGGCQQSCVNMMGSYECHCREGFFLSDNQHTCIQRPEGMNC
MNKNHGCAHICRETPKGGIACECRPGFELTKNQRDCKLTCNYGNGGCQHTCDDTEQGP
RCGCHIKFVLHTDGKTCIETCAVNNGGCDSKCHDAAIGVHCTCPVGFMLQPDRKTCKD
IDECRLNNGGCDHICRNTVGSFECSCKKGYKLLINERNCQDIDECSFDRTCDHICVNT
PGSFQCLCHRGYLLYGITHCGDVDECSINRGGCRFGCINTPGSYQCTCPAGQGRLHWN
GKDCTEPLKCQGSPGASKAMLSCNRSGKKDTCALTCPSRARFLPESENGFTVSCGTPS
PRAAPARAGHNGNSTNSNHCHEAAVLSIKQRASFKIKDAKCRLHLRNKGKTEEAGRIT
GPGGAPCSECQVTFIHLKCDSSRKGKGRRARTPPGKEVTRLTLELEAEVRAEETTASC
GLPCLRQRMERRLKGSLKMLRKSINQDRFLLRLAGLDYELAHKPGLVAGERAEPMESC
RPGQHRAGTKCVSCPQGTYYHGQTEQCVPCPAGTFQEREGQLSCDLCPGSDAHGPLGA
TNVTTCAGQCPPGQHSVDGFKPCQPCPRGTYQPEAGRTLCFPCGGGLTTKHEGAISFQ
DCDTKVQCSPGHYYNTSIHRCIRCAMGSYQPDFRQNFCSRCPGNTSTDFDGSTSVAQC
KNRQCGGELGEFTGYIESPNYPGNYPAGVECIWNINPPPKRKILIVVPEIFLPSEDEC
GDVLVMRKNSSPSSITTYETCQTYERPIAFTARSRKLWINFKTSEANSARGFQIPYVT
YDEDYEQLVEDIVRDGRLYASENHQEILKDKKLIKAFFEVLAHPQNYFKYTEKHKEML
PKSFIKLLRSKVSSFLRPYK"
BASE COUNT 949 a 1250 c 1127 g 816 t
ORIGIN
1 ctctctcccg gcgaagctgg gaattgggtg ggattacacg gagcagcccc gccgccgccg
61 ctggcagagg ccggcttgga gagggcgggg gttcccctcc gtcagtcgcc cctggcgccc
121 ctcgccttgt cgcactctcc gcctcgctct ccccgacgtc cggccaggag gagccggtag
181 catcgggagc ctcgcgccga gggcgccgcg gtccgcgccc cgcgactgca gcccccggcc
241 tggccccggc ggggcgcccc ctcccctccc cctcctgcga gctgggatcc ggccggcttc
301 cgccctcccc tggccgcgag accggccccg gcggctgggc cgccagtagc tccagccatg
361 ggctcggggc gcgtacccgg gctctgcctg cttgtcctgc tggtccacgc ccgcgccgcc
421 cagtacagca aagccgcgca agatgtggat gagtgtgtgg aggggactga caactgccac
481 atcgatgcta tctgccagaa caccccgagg tcatacaagt gcatctgcaa gtctggctac
541 acaggggacg gcaaacactg caaagacgtg gatgagtgcg agcgagagga taatgcaggt
601 tgtgtgcatg actgtgtcaa catccctggc aattaccggt gtacctgcta tgatggattc
661 cacctggcac atgacggaca caactgtctg gatgtggacg agtgtgccga gggcaacggc
721 ggctgtcagc agagctgtgt caacatgatg ggcagctatg agtgccactg ccgggaaggc
781 ttcttcctca gcgacaacca gcatacctgt atccagcggc cagaaggaat gaactgcatg
841 aacaagaacc acggctgtgc ccacatttgc cgggagacac ccaagggggg tattgcctgt
901 gaatgccgtc ctggctttga gcttaccaag aaccaacggg actgtaaatt gacatgcaac
961 tatggtaacg gcggctgcca gcacacgtgt gatgacacag agcagggtcc ccggtgcggc
1021 tgccatatca agtttgtgct ccataccgac gggaagacat gcatcgagac ctgtgctgtc
1081 aacaacgggg gctgtgacag taagtgccat gatgcagcga ttggtgtcca ctgcacctgc
1141 cctgtgggct tcatgctgca gccagacagg aagacgtgca aagatataga tgagtgccgc
1201 ttaaacaacg ggggctgtga ccatatttgc cgcaacacag tgggcagctt cgaatgcagt
1261 tgcaagaaag gctataagct tctcatcaat gagaggaact gccaggatat agacgagtgt
1321 tcctttgatc gaacctgtga ccacatatgt gtcaacacac caggaagctt ccagtgtctc
1381 tgccatcgtg gctacctgtt gtatggtatc acccactgtg gggatgtgga tgaatgcagc
1441 atcaaccggg gaggttgccg ctttggctgc atcaacactc ctggcagcta ccagtgtacc
1501 tgcccagcag gccagggtcg gctgcactgg aatggcaaag attgcacaga gccactgaag
1561 tgtcagggca gtcctggggc ctcgaaagcc atgctcagct gcaaccggtc tggcaagaag
1621 gacacctgtg ccctgacctg tccctccagg gcccgatttt tgccagagtc tgagaatggc
1681 ttcacggtga gctgtgggac ccccagcccc agggctgctc cagcccgagc tggccacaat
1741 gggaacagca ccaactccaa ccactgccat gaggctgcag tgctgtccat taaacaacgg
1801 gcctccttca agatcaagga tgccaaatgc cgtttgcacc tgcgaaacaa aggcaaaaca
1861 gaggaggctg gcagaatcac agggccaggt ggtgccccct gctctgaatg ccaggtcacc
1921 ttcatccacc ttaagtgtga ctcctctcgg aagggcaagg gccgacgggc ccggacccct
1981 ccaggcaaag aggtcacaag gctcaccctg gaactggagg cagaggtcag agccgaagaa
2041 accacagcca gctgtgggct gccctgcctc cgacagcgaa tggaacggcg gctgaaagga
2101 tccctgaaga tgctcagaaa gtccatcaac caggaccgct tcctgctgcg cctggcaggc
2161 cttgattatg agctggccca caagccgggc ctggtagccg gggagcgagc agagccgatg
2221 gagtcctgta ggcccgggca gcaccgtgct gggaccaagt gtgtcagctg cccgcaggga
2281 acgtattacc acggccagac ggagcagtgt gtgccatgcc cagcgggcac cttccaggag
2341 agagaagggc agctctcctg cgacctttgc cctgggagtg atgcccacgg gcctcttgga
2401 gccaccaacg tcaccacgtg tgcaggtcag tgcccacctg gccaacactc tgtagatggg
2461 ttcaagccct gtcagccatg cccacgtggc acctaccaac ctgaagcagg acggacccta
2521 tgcttccctt gtggtggggg cctcaccacc aagcatgaag gggccatttc cttccaagac
2581 tgtgacacca aagtccagtg ctccccaggg cactactaca acaccagcat ccaccgctgt
2641 attcgctgtg ccatgggctc ctatcagccc gacttccgtc agaacttctg cagccgctgt
2701 ccaggaaaca caagcacaga ctttgatggc tctaccagtg tggcccaatg caagaatcgt
2761 cagtgtggtg gggagctggg tgagttcact ggctatattg agtcccccaa ctacccgggc
2821 aactacccag ctggtgtgga gtgcatctgg aacatcaacc ccccacccaa gcgcaagatc
2881 cttatcgtgg taccagagat cttcctgcca tctgaggatg agtgtgggga cgtcctcgtc
2941 atgagaaaga actcatcccc atcctccatt accacttatg agacctgcca gacctacgag
3001 cgtcccattg ccttcactgc ccgttccagg aagctctgga tcaacttcaa gacaagcgag
3061 gccaacagcg cccgtggctt ccagattccc tatgttacct atgatgagga ctatgagcag
3121 ctggtagaag acattgtgcg agatggccgg ctctatgcct ctgaaaacca ccaggagatt
3181 ttaaaggaca agaagctcat caaggccttc tttgaggtgc tagcccaccc ccagaactac
3241 ttcaagtaca cagagaaaca caaggagatg ctgccaaaat ccttcatcaa gctgctccgc
3301 tccaaagttt ccagcttcct gaggccctac aaatagtaac cctaggctca gagacccaat
3361 tttttaagcc cccagactcc ttagccctca gagccggcag ccccctaccc tcagacaagg
3421 aactctctcc tctctttttg gagggaaaaa aaaaatatca ctacacaaac caggcactct
3481 ccctttctgt ctttctagtt tcctttcctt gtctctctct gcctgcctct ctactgttcc
3541 cccttttcta acacactacc tagaaaagcc attcagtact ggctctagtc cccgtgagat
3601 gtaaagaaac agtacagccc cttccactgc ccattttacc agctcacatt cccgacccca
3661 tcagcttgga agggtgctag aggcccatca aggaagtggg tctggtggga aacggggagg
3721 ggaaagaagg gcttctgcca ttatagggtt gtgccttgct agtcaggggc caaaatgtcc
3781 cctggctctg ctccctaggg tgattctaac agcccagggt cctgccaaag aagcctttga
3841 tttacaggct taatgccagc accagtcctc tggggcacat ggtttgagct ctggacttcc
3901 cacatggcca gctttcttgt ctatacagat cctctctttc tttccctacg tctgcctggg
3961 gtctactcca taagggttta caaatggccc acaacactga gttagtggac accggctaaa
4021 tgaggaagag cagcaggcat tgtcatggtg aatgccccgc tgtagctccc tgagagaaag
4081 actgtaactc tgcaggacag aaacaaggtt ttaaagcatt gccaaaaaaa aaaaaaaaaa
4141 aa
//