LOCUS BC052262 3510 bp mRNA linear HUM 09-MAR-2007
DEFINITION Homo sapiens xylosyltransferase II, mRNA (cDNA clone MGC:59736
IMAGE:6380013), complete cds.
ACCESSION BC052262
VERSION BC052262.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3510)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3510)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: l Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11545913.
FEATURES Location/Qualifiers
source 1..3510
/db_xref="H-InvDB:HIT000099485"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59736 IMAGE:6380013"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3510
/gene="XYLT2"
/gene_synonym="XT-II"
/gene_synonym="XT2"
/gene_synonym="xylT-II"
/db_xref="GeneID:64132"
/db_xref="HGNC:HGNC:15517"
/db_xref="MIM:608125"
CDS 30..2627
/gene="XYLT2"
/gene_synonym="XT-II"
/gene_synonym="XT2"
/gene_synonym="xylT-II"
/codon_start=1
/product="xylosyltransferase II"
/protein_id="AAH52262.2"
/db_xref="GeneID:64132"
/db_xref="HGNC:HGNC:15517"
/db_xref="MIM:608125"
/translation="MVASARVQKLVRRYKLAIATALAILLLQGLVVWSFSGLEEDEAG
EKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTSR
QRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPTDNGFTP
KCEIVGKDALSALARASTKQCQQEIANVVCLHQAGSLMPKAVPRHCQLTGKMSPGIQW
DESQAQQPMDGPPVRIAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHRE
VVELAQGYDNVRVTPWRMVTIWGGASLLTMYLRSMRDLLEVPGWAWDFFINLSATDYP
TRTNEELVAFLSKNRDKNFLKSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQIPAG
IVVDGGSDWFVLTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACET
LVDNNLRVTNWNRKLGCKCQYKHIVDWCGCSPNDFKPQDFLRLQQVSRPTFFARKFES
TVNQEVLEILDFHLYGSYPPGTPALKAYWENTYDAADGPSGLSDVMLTAYTAFARLSL
HHAATAAPPMGTPLCRFEPRGLPSSVHLYFYDDHFQGYLVTQAVQPSAQGPAETLEMW
LMPQGSLKLLGRSDQASRLQSLEVGTDWDPKERLFRNFGGLLGPLDEPVAVQRWARGP
NLTATVVWIDPTYVVATSYDITVDTETEVTQYKPPLSRPLRPGPWTVRLLQFWEPLGE
TRFLVLPLTFNRKLPLRKDDASWLHAGPPHNEYMEQSFQGLSSILNLPQPELAEEAAQ
RHTQLTGPALEAWTDRELSSFWSVAGLCAIGPSPCPSLEPCRLTSWSSLSPDPKSELG
PVKADGRLR"
BASE COUNT 737 a 1056 c 1089 g 628 t
ORIGIN
1 ggcgcgcgcc ccgcgtcccg ggcaggaaga tggtggcgag cgcgcgagtg cagaagctgg
61 tgcggcgcta caagctggcg attgccacgg cgctggccat cctgctgctg cagggcctgg
121 tagtgtggag cttcagcggc ctggaggagg acgaggcggg cgagaaagga aggcagagga
181 agccacggcc actggaccct ggcgaaggtt ccaaggacac agacagttca gcagggcgac
241 ggggcagcac aggcagaagg catgggcgct ggcggggccg tgctgagagc ccaggagtgc
301 ccgtggccaa ggtggtacgg gcagtaacca gccggcagag agccagccgg cgggtcccac
361 ctgccccacc tccggaagcc ccaggccgcc agaacctgag tggggcagca gctggggagg
421 cgctggtagg ggcagctggc ttcccaccac acggagatac agggagcgtg gagggcgccc
481 cccagcccac ggacaatggc ttcaccccca agtgcgagat cgtgggcaag gacgcactgt
541 ctgcactggc ccgggccagc accaagcagt gccagcagga gatcgccaat gtggtgtgcc
601 tgcaccaggc tgggagcctc atgcccaagg ctgtgccccg gcactgtcag ctgactggga
661 agatgagccc cggcatccag tgggatgaga gccaagccca gcagcccatg gatggccccc
721 cggtgcgaat cgcctacatg ctggtggttc acggccgcgc catccgccag ctgaagcgtc
781 tcctcaaggc cgtttatcac gagcagcact tcttttacat ccatgtggac aagcgttccg
841 actacctgca ccgggaggtg gtggagctgg cccagggcta tgataacgtg cgggtgacgc
901 cctggcgcat ggttaccatc tggggcgggg ccagcctcct gacgatgtac ctgcggagca
961 tgcgggacct gctagaggtg cctggctggg cctgggactt cttcatcaac ctcagtgcca
1021 ctgactatcc aaccaggacc aatgaggagc tggtggcatt cctatccaag aaccgggaca
1081 agaatttcct caagtcacat ggccgggaca actccaggtt catcaagaaa cagggcctgg
1141 accggctctt ccatgagtgc gactcacaca tgtggcgcct gggcgagcgg cagatcccag
1201 caggcattgt ggtggatggc ggttctgact ggttcgtgct gacacgcagc tttgtggagt
1261 atgtggtgta cacagatgac ccgcttgtgg cccagctgcg ccagttctac acatacacac
1321 tgctcccagc cgagtccttc ttccacacgg tgctggagaa cagcctggcc tgtgagaccc
1381 tcgtggacaa caacctgcgg gtcaccaact ggaaccgcaa gctgggctgc aagtgccagt
1441 acaagcacat tgtggactgg tgtggctgct cccccaacga cttcaagcca caggacttcc
1501 tccggctgca gcaagtctcc agacccacct tcttcgcccg gaagttcgag tcgactgtga
1561 accaggaggt gctggaaatc ctggacttcc acctgtacgg cagctacccc cccggcacgc
1621 cagccctcaa ggcctactgg gagaacacct acgacgcggc tgatggcccc agtgggctca
1681 gtgatgtcat gctcactgct tacacagcct tcgcccgcct cagcctgcac catgccgcca
1741 ctgctgcacc cccaatgggc accccactct gcaggtttga gcccaggggc ttgccgtcca
1801 gcgtgcacct gtatttctat gacgaccatt tccagggcta cctggtgacg caggcggtgc
1861 agccctcagc ccaggggccg gcagagacgc ttgagatgtg gctgatgccc caagggtcgc
1921 tgaagctgtt ggggcgcagt gaccaggcca gccggctcca gagtctggag gttggcactg
1981 attgggaccc caaagagcgt cttttccgga actttggggg gttactgggg ccgctggacg
2041 agcctgtggc cgtgcagcgc tgggcccggg gccccaacct cacagccaca gtggtctgga
2101 tcgacccaac ctatgtggtg gccacatctt atgacatcac agtagatacg gagactgagg
2161 tcacgcaata caagccccca ctgagccggc ccctgcggcc agggccctgg actgttcgac
2221 tccttcagtt ctgggaaccg ctgggtgaga cccgcttcct tgtgctgccc ttgaccttca
2281 accgcaaact acctctcagg aaagatgatg ccagctggct gcacgcaggg ccaccccaca
2341 acgagtacat ggagcagagt ttccagggcc tgagtagcat cctgaacctg cctcagccgg
2401 agctcgcgga ggaggctgcc cagcggcaca cacagctcac aggccctgcg ctcgaggcct
2461 ggacagacag ggaactgagc agcttctggt ccgtggctgg actgtgtgcc ataggcccct
2521 ctccctgccc ctccctggag ccctgcagac tgaccagctg gagctctctg tcccccgacc
2581 ccaaatcaga gctggggcct gtcaaagcag acgggcgact caggtagcag ggccccagcc
2641 agtacccgtg gaggacccgg gaaattgcac cttacagaca gtggaggggt gtcccctccc
2701 acaggcaaga accagaggcc caggctgcac acccatttca gccatcaaga acccacacag
2761 acggcaggga aggtggacac agtatgaact actgctgatg tctctgttgg ggatcagagg
2821 gctggcggga acgcgagaag ggcaccagca gcattccaca cccagctctt cctcaccttc
2881 ctgtctagtt tgaatttctt ttttttcttt ttcttttttt tttttttaat ttaaaaagga
2941 aaatgggtgg ttgggagaga aactagaaca gaagatgtgc aatagggctc agagcagccc
3001 caggaagtgg gccatgtctg tggggagcag gggcttgctg agcccacctg ctattgttct
3061 gcacgaggct gggcctgcct cactctccag ggcctcatgc cccattctgg gcctgtggtg
3121 ctcgtggctg aggctccaca gggctgcaag tgccctgcca ggctctaagg cccgaagaac
3181 aggtgatatc gggggcgctg cagagctggg ctctagcagg acagttcttt tgtagccagg
3241 ggaccctaga agtggggtgg ggcggctcca gggctttcca gcataccctg cccctggatg
3301 ggaaaggcag ggtcagggcc cactgagacc catgcagagt ttccaggtgt gcactggaag
3361 tgaggtcaca tgagcagcgt gggaagaaga ctctgtcaag actctcagaa gaacctggag
3421 taattgtgcc tgaagctcag cgtgaagtct gaaatatgca acagaagaaa tatatctcta
3481 tctctctaaa aaaaaaaaaa aaaaaaaaaa
//