LOCUS BC051838 2226 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens Rho guanine exchange factor (GEF) 16, mRNA (cDNA clone MGC:60142 IMAGE:6191377), complete cds. ACCESSION BC051838 VERSION BC051838.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2226) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2226) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 110 Row: n Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 15011976. FEATURES Location/Qualifiers source 1..2226 /db_xref="H-InvDB:HIT000053701" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:60142 IMAGE:6191377" /tissue_type="Peripheral Nervous System, sympathetic trunk" /clone_lib="Lupski_sympathetic_trunk" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2226 /gene="ARHGEF16" /gene_synonym="GEF16" /gene_synonym="NBR" /db_xref="GeneID:27237" CDS 420..1685 /gene="ARHGEF16" /gene_synonym="GEF16" /gene_synonym="NBR" /codon_start=1 /product="ARHGEF16 protein" /protein_id="AAH51838.1" /db_xref="GeneID:27237" /translation="MFEILTSEFSYQHSLSILVEEFLQSKELRATVTQMEHHHLFSNI LDVLGASQRFFEDLEQRHKAQVLVEDISDILEEHAEKHFHPYIAYCSNEVYQQRTLQK LISSNAAFREALREIERRPACGGLPMLSFLILPMQRVTRLPLLMDTLCLKTQGHSERY KAASRALKAISKLVRQCNEGAHRMERMEQMYTLHTQLDFSKVKSLPLISASRWLLKRG ELFLVEETGLFRKIASRPTCYLFLFNDVLVVTKKKSEESYMVQDYAQMNHIQVEKIEP SELPLPGGGNRSSSVPHPFQVTLLRNSEGRQEQLLLSSDSASDRARWIVALTHSERQW QGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFP EDFARFITSRVAVEGNVRRMERLRVETDV" misc_feature 420..956 /gene="ARHGEF16" /gene_synonym="GEF16" /gene_synonym="NBR" /note="RhoGEF; Region: Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases" /db_xref="CDD:smart00325" BASE COUNT 471 a 672 c 702 g 381 t ORIGIN 1 cgtgaggccc tgtggagctg acatctattg ggcacagctt cgcatgtgga gccgagaggt 61 ctctggggtc ccagggcaga atcgccgtgg gcaacacctg ccccggctga cagctgcggt 121 ttctgtgtct ctcttttgtg cagaagacgc tggggaggaa acgtgggcac aagggttcct 181 tcaaggacga cccccagctc taccaggaga tccaggagcg gggcctgaac accagccagg 241 agtctgatga cgacatcctc gatgagtcct ccagccccga gggaacccag aaggtggacg 301 ccaccattgt ggtcaagagc taccggcccg cccaggtcac ctggagccag ctcccggagg 361 tggtggaatt gggcatcctg gaccagctct ccactgagga gcggaaaagg caggaggcca 421 tgttcgagat cctcacgtcg gagttctcct accagcacag cctgagcatc ctggtggagg 481 agttcctgca gtccaaggag ctgcgggcga ccgtgaccca gatggagcac caccacctct 541 tctccaacat cctggatgtc ctgggtgcca gtcagaggtt cttcgaggac ctggagcagc 601 ggcacaaggc ccaggtgctg gtcgaggaca tcagtgacat cctggaggag cacgctgaga 661 agcacttcca cccctacatc gcctactgct ccaacgaggt ctaccaacag cgcacgctgc 721 agaagctgat aagcagcaac gccgccttcc gagaggccct gagagagatt gagaggcggc 781 cggcgtgcgg gggcctgccc atgctctcct tcctgatcct ccccatgcag cgggtgaccc 841 ggctgcccct cctgatggat acgctctgcc tcaagaccca gggccactcc gaaaggtaca 901 aggctgccag ccgtgcactg aaggccatca gcaagctggt gaggcagtgc aacgaggggg 961 cccacaggat ggagcgcatg gagcagatgt acacgctgca cacacagctg gacttcagca 1021 aggtcaagtc tctcccactg atctccgcct cccggtggct gctgaagcgc ggagagctgt 1081 tcttagtgga agaaaccgga ctttttcgaa aaattgccag ccggccaacg tgctaccttt 1141 tcctgttcaa cgatgtcctg gttgtgacca agaagaagag cgaggagagc tacatggtcc 1201 aggactacgc ccagatgaac cacatccagg tggagaagat agagccgtct gagctccctc 1261 tgcccggggg cggcaaccgt agctcctccg tgccccaccc cttccaggtg accctgcttc 1321 gcaacagcga gggccgccag gagcagctcc tgctctcctc ggactccgcg agtgaccggg 1381 cacggtggat cgtggcgctc acacacagtg agagacagtg gcagggcctc tccagcaaag 1441 gagacctgcc ccaggtggag atcaccaagg ccttcttcgc gaagcaagca gacgaggtca 1501 cactgcagca ggcggacgtg gtcctggttc tgcagcagga ggatgggtgg ctctatggcg 1561 agaggctccg ggacggagag acgggatggt tccccgagga ctttgcccgc ttcatcacca 1621 gccgtgtggc cgtggagggc aatgtccgca ggatggagcg tctgcgggtg gagacggacg 1681 tgtagccctg gcgaggccag ccggcggcag cacagcctgt ccccaatcag caagtggtcg 1741 tgcctggctc tagagagcgt ggggagctgg tctcaaggac ccagcatggt tccctggggc 1801 ttcccaagag cctgtggctg tggtgccggg ctccagacac ttcacggaag gaagatcaca 1861 tgtccccaga gaggcacccc caggcaagct cgagggggcc acaccgtgtc ccagggagcc 1921 cagcctattc ccgttggctg gctgggcccc tctcagctgc tgggccccac ctccccactg 1981 cacccagggg gcaactccac ctggactgat gggcacagga ggcaccaata gcgattattg 2041 ggggcaatgc gaggtctcct cctatgccct tcctacccct gagtgggaca agaagggccc 2101 tgagtgccca ggagtgcccc acgttctgag aaggggccgg ccggagggag gggacccggc 2161 agggagattt cggttttgag gtttctaaat acattaaagt tatttcttaa gaaaaaaaaa 2221 aaaaaa //