LOCUS BC051825 2898 bp mRNA linear HUM 03-NOV-2008 DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, mRNA (cDNA clone IMAGE:6502029), partial cds. ACCESSION BC051825 VERSION BC051825.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2898) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2898) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 110 Row: o Column: 17. FEATURES Location/Qualifiers source 1..2898 /db_xref="H-InvDB:HIT000099430" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6502029" /tissue_type="Uterus, leiomyosarcoma" /clone_lib="NIH_MGC_71" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..>2898 /gene="SMARCA1" /gene_synonym="ISWI" /gene_synonym="NURF140" /gene_synonym="SNF2LB" /gene_synonym="SWI" /gene_synonym="SWI2" /db_xref="GeneID:6594" /db_xref="HGNC:HGNC:11097" /db_xref="MIM:300012" CDS <1..>2898 /gene="SMARCA1" /gene_synonym="ISWI" /gene_synonym="NURF140" /gene_synonym="SNF2LB" /gene_synonym="SWI" /gene_synonym="SWI2" /codon_start=2 /product="SMARCA1 protein" /protein_id="AAH51825.2" /db_xref="GeneID:6594" /db_xref="HGNC:HGNC:11097" /db_xref="MIM:300012" /translation="FQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH FIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTS NVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG YLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPG EWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLT GTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLR RIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQ LRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTR LLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL ASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLR LDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKK TAEMNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANY AVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKV PRNPDIPNPALAQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANE KYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRIS IKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELR QCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAKKKK" BASE COUNT 986 a 501 c 656 g 755 t ORIGIN 1 atttcaactc aaacttgctg ctaaagcgcc taaatctgaa aaggaaatgg acccagaata 61 tgaagagaaa atgaaagccg accgagcaaa gagatttgaa tttttactga agcagacaga 121 actttttgca catttcattc agccttcagc acagaaatct ccaacatctc cactgaacat 181 gaaattggga cgtccccgaa taaagaaaga tgaaaagcag agcttaattt ctgctggaga 241 ctaccgccat aggcgcacag agcaagaaga agatgaagag ctactgtctg agagtcggaa 301 aacatctaat gtgtgtatta gatttgaggt gtcaccttca tatgtgaaag gggggccact 361 gagagattat cagattcgag gactgaattg gttgatctct ttatatgaaa atggagtcaa 421 tggcattttg gctgatgaaa tgggccttgg gaaaacttta caaacaattg ctttgcttgg 481 ttacctgaaa cactaccgaa atattcctgg acctcacatg gttttagttc caaagtctac 541 tttacacaac tggatgaatg aatttaaacg atgggtccca tctctccgtg tcatttgttt 601 tgtcggagac aaggatgcca gagctgcttt tattcgtgat gaaatgatgc caggagagtg 661 ggatgtttgc gttacttctt atgagatggt aattaaagaa aaatctgtat tcaaaaagtt 721 tcactggcga tacctggtca ttgatgaagc tcacagaata aagaatgaaa aatctaagct 781 ttcagagatt gttcgtgagt tcaagtcgac taaccgcttg ctcctaactg gaacaccttt 841 gcagaataac ctgcatgaac tgtgggcctt actcaacttt ttattgcctg atgtctttaa 901 ttctgcagat gactttgatt cttggtttga cactaaaaat tgtcttggtg atcaaaaact 961 cgtggaaaga cttcatgcag ttttaaaacc atttttgtta cgccgtataa aaactgatgt 1021 agagaagagt ctgccaccta aaaaggaaat aaagatttac ttggggctga gtaagatgca 1081 acgagaatgg tatacaaaaa tcctgatgaa agatattgat gttttaaact cttctggcaa 1141 gatggacaag atgcgactct taaacattct gatgcagctt cgaaagtgtt gtaatcatcc 1201 atatctgttt gatggtgctg aacctggtcc accttatacc actgatgagc atattgtcag 1261 caacagtggt aaaatggtag ttctggataa actattggcc aaactcaaag aacagggttc 1321 aagggttctc attttcagcc agatgactcg cttgctggat attttggaag attattgcat 1381 gtggcgtggt tatgagtatt gtcgactgga tggacaaacc ccgcatgaag aaagagagga 1441 agcaatagag gcttttaatg ctcctaatag tagcaaattc atctttatgc taagtaccag 1501 ggctggaggt ctcggaatta acctggcaag tgctgatgtg gttatactat atgattcaga 1561 ctggaaccca caggttgatc tacaagctat ggatcgagca catcgtattg gtcagaagaa 1621 accagtacgt gtattccgtc tcatcactga caacactgtt gaagagagga ttgtagaaag 1681 agctgagata aaactgagac tcgattcaat tgttatacaa caaggaagac tcattgacca 1741 acagtctaac aagctggcaa aagaggaaat gttacaaatg atacggcatg gagccaccca 1801 tgtttttgct tctaaagaga gtgagttgac agatgaagac attacaacta ttctggaaag 1861 aggggaaaag aagactgcag agatgaatga acgcctgcaa aaaatgggag agtcttctct 1921 aagaaatttt agaatggaca ttgaacaaag tttatacaaa tttgagggag aagattatag 1981 agaaaaacag aagcttggca tggtggaatg gattgaacct cctaaacgag aacgcaaagc 2041 aaactacgca gtggatgcct actttagaga ggctttgcgt gtcagcgagc caaagattcc 2101 aaaggctcca cggcctccaa aacagccaaa tgttcaggat tttcaatttt tcccaccacg 2161 cttatttgag ctcctggaaa aggaaattct ttattatcgg aagacaatag gctataaggt 2221 tccaaggaat cctgatatcc caaatccagc tctggctcaa agagaagagc aaaaaaagat 2281 tgatggagct gaacctctta caccagaaga gactgaagaa aaggaaaaac ttctcacaca 2341 aggtttcaca aactggacta aacgagattt taaccagttt attaaagcta atgagaaata 2401 tggaagagat gacattgata acatagctcg agaggtagag ggcaaatccc ctgaggaggt 2461 catggagtat tcagctgtat tttgggaacg ttgcaatgaa ttacaggaca ttgagaaaat 2521 tatggctcaa attgaacgtg gagaagcaag aattcaacga aggatcagta tcaagaaagc 2581 cctggatgcc aaaattgcaa gatacaaggc tccatttcat cagttgcgca ttcagtatgg 2641 aaccagcaaa ggaaagaact atactgagga agaagataga ttcttgattt gtatgttaca 2701 caaaatgggc tttgatagag aaaatgtata tgaagaatta agacagtgtg tacgaaatgc 2761 tccccagttt agatttgact ggtttatcaa gtctaggact gccatggaat tccagagacg 2821 ctgtaacact ctgatttcat tgattgagaa agaaaatatg gaaattgagg aaagagagag 2881 agcaaaaaaa aaaaaaaa //