LOCUS BC051715 3868 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens neuroligin 3, mRNA (cDNA clone MGC:48305
IMAGE:5258980), complete cds.
ACCESSION BC051715
VERSION BC051715.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3868)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3868)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: l Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51593087.
FEATURES Location/Qualifiers
source 1..3868
/db_xref="H-InvDB:HIT000053660"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48305 IMAGE:5258980"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3868
/gene="NLGN3"
/gene_synonym="ASPGX1"
/gene_synonym="AUTSX1"
/gene_synonym="HNL3"
/gene_synonym="KIAA1480"
/db_xref="GeneID:54413"
/db_xref="HGNC:HGNC:14289"
/db_xref="MIM:300336"
CDS 265..2751
/gene="NLGN3"
/gene_synonym="ASPGX1"
/gene_synonym="AUTSX1"
/gene_synonym="HNL3"
/gene_synonym="KIAA1480"
/codon_start=1
/product="neuroligin 3"
/protein_id="AAH51715.1"
/db_xref="GeneID:54413"
/db_xref="HGNC:HGNC:14289"
/db_xref="MIM:300336"
/translation="MWLRLGPPSLSLSPKPTVGRSLCLTLWFLSLALRASTQAPAPTV
NTHFGKLRGARVPLPSEILGPVDQYLGVPYAAPPIGEKRFLPPEPPPYWSGIRNATHF
PPVCPQNIHTAVPEVMLPVWFTANLDIVATYIQEPNEDCLYLNVYVPTEDGSGAKKQG
EDLADNDGDEDEDIRDSGAKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIVITLNYR
VGVLGFLSTGDQAAKGNYGLLDQIQALRWVSENIAFFGGDPRRITVFGSGIGASCVSL
LTLSHHSEGLFQRAIIQSGSALSSWAVNYQPVKYTSLLADKVGCNVLDTVDMVDCLRQ
KSAKELVEQDIQPARYHVAFGPVIDGDVIPDDPEILMEQGEFLNYDIMLGVNQGEGLK
FVEGVVDPEDGVSGTDFDYSVSNFVDNLYGYPEGKDTLRETIKFMYTDWADRDNPETR
RKTLVALFTDHQWVEPSVVTADLHARYGSPTYFYAFYHHCQSLMKPAWSDAAHGDEVP
YVFGVPMVGPTDLFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTKAN
RFEEVAWSKYNPRDQLYLHIGLKPRVRDHYRATKVAFWKHLVPHLYNLHDMFHYTSTT
TKVPPPDTTHSSHITRRPNGKTWSTKRPAISPAYSNENAQGSWNGDQDAGPLLVENPR
DYSTELSVTIAVGASILFLNVLAFAALYYRKDKRRQEPLRQPSPQRGAWAPELGAAPE
EELAALQLGPTHHECEASPPHDTLRLTALPDYTLTLRRSPDDIPLMTPNTITMIPNSL
VGLQTLHPYNTFAAGFNSTGLPHSHSTTRV"
BASE COUNT 896 a 1154 c 983 g 835 t
ORIGIN
1 gggctggagg cgatatgggt ggtccgtggc ccggttcagt cacttgcagc agcccgggga
61 acaggcctgt ctggccctga gggagtcccc tttctgaagc tgtggtgctt ggacgacctg
121 ctctctacat tgctgggcac ctgtaggtgt ccctcgagag ctcagttttg aggttcaagt
181 cagtgtggcc atgaaggggc tgcctattgg gctgatgctg tgaccctgga gtctgcctct
241 cctgccagtc cccctgcccg gaacatgtgg ctgcggcttg gcccgccctc gctgtccctg
301 agccccaagc ccacggttgg caggagcctg tgcctcaccc tgtggttcct cagtttggcg
361 ctgagggcca gtacccaggc cccagcaccc acagtcaaca ctcactttgg gaagctaagg
421 ggtgcccgag taccactgcc cagtgagatc ctggggcctg tggaccaata cctgggggtg
481 ccctacgcag ctcccccgat cggcgagaaa cgtttcctgc cccctgaacc acccccatac
541 tggtcgggca tccggaacgc cacacacttt ccaccagtgt gcccccagaa catccacaca
601 gctgtgcccg aagtcatgct gccggtctgg ttcactgcca acttggatat cgtcgctact
661 tacatccagg agcccaacga agactgtctc tacctgaacg tctatgtgcc gacggaggat
721 ggatccggcg ctaagaaaca gggcgaggac ttagcggata atgacgggga tgaagatgaa
781 gacatccggg acagtggtgc taaacccgtc atggtctaca tccacggagg ctcttacatg
841 gaagggacag gcaacatgat tgatggcagc atcctcgcca gttatggcaa tgtcatcgtc
901 atcaccctca actatcgggt tggagtgcta ggtttcctga gtactggaga tcaggctgcc
961 aagggcaact atgggctcct tgaccagatc caggccctcc gctgggtgag cgagaatatt
1021 gccttcttcg ggggagaccc ccgccggatc actgtctttg gctcgggcat tggtgcatcc
1081 tgcgtcagcc tcctaacgtt gtcacatcac tcagagggac ttttccagag agccatcatc
1141 caaagtggct ctgctctgtc cagctgggct gtgaactacc aaccagtgaa gtacaccagc
1201 ctgctggcag acaaagtggg ctgtaatgtg ctggacaccg tggatatggt ggactgtctt
1261 cggcaaaaga gtgccaagga gctggtagag caggacatcc agccagcccg ctaccacgtg
1321 gcctttggcc ctgtgattga tggtgatgtc attcctgatg accctgagat cctcatggag
1381 cagggcgagt tcctcaacta tgacatcatg ctaggtgtca accagggcga gggtctcaag
1441 tttgtggaag gggtggtgga ccctgaggat ggtgtctctg gcactgactt tgactattcc
1501 gtctccaatt ttgtggacaa tctgtatggc tatcctgagg gtaaggacac cctgcgagag
1561 accatcaagt tcatgtatac agactgggca gaccgtgaca accctgagac ccgccgtaaa
1621 acactggtgg cactcttcac tgaccaccag tgggtggagc cctcagtggt gacagccgat
1681 ctgcatgccc gctacggctc gcctacctac ttctacgcct tctatcatca ctgccagagc
1741 ctcatgaagc ctgcttggtc agatgcagct catggggatg aagtacccta tgtttttggg
1801 gttcctatgg taggccccac tgaccttttc ccctgcaact tctccaagaa tgatgttatg
1861 ctcagtgctg tcgtcatgac ctattggacc aactttgcca agactgggga tcccaacaag
1921 ccggtccccc aggacaccaa gttcattcac accaaggcca accgctttga ggaagtggcc
1981 tggtccaaat acaatccccg agaccagctc taccttcaca tcgggctgaa accaagggtc
2041 cgagatcatt accgggccac taaggtggcc ttttggaaac atctggtgcc gcacctatac
2101 aacctgcatg acatgttcca ctatacgtcc accaccacca aagtgccgcc tccggatacc
2161 acccacagct cccacatcac ccgcaggccc aatggcaaga cctggagcac caagcggcca
2221 gccatctcac ctgcctacag caacgagaat gcccaggggt cctggaacgg ggaccaggat
2281 gcagggccac tcctggtgga gaaccctcgt gactactcca ctgaattaag tgtcaccatc
2341 gccgtggggg cctccatcct gttccttaac gttctggcct tcgctgccct ctactaccgt
2401 aaggacaaac ggcgccagga gcccctgcgg cagcctagcc ctcagcgggg agcctgggcc
2461 ccggagttgg gagctgctcc agaggaggag ctggcagcat tacaactggg ccccacccac
2521 cacgagtgtg aggccagtcc cccccatgac acgctgcgcc tcactgcatt gcccgactac
2581 accctgaccc tgcggcgctc cccggatgac atcccactca tgacccccaa caccatcact
2641 atgatcccca actccctggt agggctgcag acattgcacc cctataacac ctttgccgca
2701 gggttcaaca gtaccgggct gccccactca cactccacta cccgggtata gctccaactc
2761 agagtacagc caatctccag gctccctccc tcccagatcc aggaacacat gcacacacac
2821 acacacacac acacgcagac acacacacac acacacatat atgtatacgc acgcacccac
2881 accctacagc agatccacct gcacaaacat agacagatgt ggacatgcac ccgcatgtac
2941 aaaaacacaa atacggaagt aaacctgaac aaacccttta aatggggacg cagatgagtc
3001 ctcggtaaac cgaggaccca tgaaacagca gctgaagcca gctccctgaa tctgaccaca
3061 gacactcctg gggggcctga aagcaacagc tggacacccc attggtgctc gccttcggcc
3121 tctcttggaa ctgcaccacc gaccaactcc agacttggga gctttaaaga gcaggatagc
3181 tcttcctccc caggacttgg tcttttttct gggtcttgtt ttgttgattt ttctttttta
3241 attttggaac aaatgctttt ccaacccatg agtgctaaga gcctctggaa gggagggctt
3301 caggcccgaa ggtctctctg gctctaggac ccccagtgct cacacaatca gaccaaggaa
3361 caagaccccc aggaaggaaa cagatttaag caagaccatg gggtggaagg agaaaggggc
3421 tagcactgga tggagctgga gggtcgtagg ggagagatct ccaactctct ctgtgtccgt
3481 gtggagggct gcagagcctg cagggtgacc tgcttcccca aaggccaaca gcattggcct
3541 ggccagacca ggtgacctta gatttggtga acaacgtact atggaagcca catcactatt
3601 gggcccccag gtctgatctg ggttttgcct ctgcccttgg ggaaatgcta tcagaaattc
3661 gccccatttt ctttacagtc ttttgtgtct gtcatttctc tttcaaaaag gcggtgtttt
3721 ttgttgttgt tggttttttt tttttttaaa gaaaagttct taaaacacta acggaaaccc
3781 atggagtttg tcctttgtaa aaattttaaa cacagtgtct tgatataaaa ataaaaaatc
3841 cagttagcac tcccaaaaaa aaaaaaaa
//