LOCUS BC051287 3811 bp mRNA linear HTC 27-OCT-2008 DEFINITION Homo sapiens protocadherin 1, mRNA (cDNA clone IMAGE:6646310), containing frame-shift errors. ACCESSION BC051287 VERSION BC051287.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3811) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3811) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 47 Row: o Column: 21 This clone has the following problem: frame shifted. FEATURES Location/Qualifiers source 1..3811 /db_xref="H-InvDB:HIT000099297" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6646310" /tissue_type="Ovary, teratocarcinoma" /clone_lib="NIH_MGC_109" /lab_host="DH10B-R" /note="Vector: pOTB7" BASE COUNT 849 a 1140 c 1106 g 716 t ORIGIN 1 gcggcgcgga cgcaaagccg ccgggctgct gcgcccagag ccagccggag ccggagccgg 61 agcccgaact gcagctccag ccccagccgt gcggagccgc agcccaggcc ggggccggcg 121 gcggctcatg gacagcgggg cgggcggccg gcgctgcccg gaggcggccc tcctgattct 181 ggggcctccc aggatggagc acctgaggca cagcccaggc cctggggggc aacggctact 241 gctgccctcc atgctgctag cactgctgct cctgctggct ccatccccag gccacgccac 301 tcgggtagtg tacaaggtgc cggaggaaca gccacccaac accctcattg ggagcctcgc 361 agccgactat ggttttccag atgtggggca cctgtacaag ctagaggtgg gtgccccgta 421 ccttcgcgtg gatggcaaga caggtgacat tttcaccacc gagacctcca tcgaccgtga 481 ggggctccgt gaatgccaga accagctccc tggtgatccc tgcatcctgg agtttgaggt 541 atctatcaca gacctcgtgc agaatggcag cccccggctg ctagagggcc agatagaagt 601 acaagacatc aatgacaaca cacccaactt cgcctcacca gtcatcactc tggccatccc 661 tgagaacacc aacatcggct cactcttccc catcccgctg gcttcagacc gtgatgctgg 721 tcccaacggt gtggcatcct atgagctgca ggctgggcct gaggcccagg agctatttgg 781 gctgcaggtg gcagaggacc aggaggagaa gcaaccacag ctcattgtga tgggcaacct 841 ggaccgtgag cgctgggact cctatgacct caccatcaag gtgcaggatg gcggcagccc 901 cccacgcgcc agcagtgccc tgctgcgtgt caccgtgctt gacaccaatg acaacgcccc 961 caagtttgag cggccctcct atgaggccga actatctgag aatagcccca taggccactc 1021 ggtcatccag gtgaaggcca atgactcaga ccaaggtgcc aatgcagaaa tcgaatacac 1081 attccaccag gcgcccgaag ttgtgaggcg tcttcttcga ctggacttat cactgttcag 1141 ggcccggtgg accgtgagga cctaagcacc ctgcgcttct cagtgcttgc taaggaccga 1201 ggcaccaacc ccaagagtgc ccgtgcccag gtggttgtga ccgtgaagga catgaatgac 1261 aatgccccca ccattgagat ccggggcata gggctagtga ctcatcaaga tgggatggct 1321 aacatctcag aggatgtggc agaggagaca gctgtggccc tggtgcaggt gtctgaccga 1381 gatgagggag agaatgcagc tgtcacctgt gtggtggcag gtgatgtgcc cttccagctg 1441 cgccaggcca gtgagacagg cagtgacagc aagaagaagt atttcctgca gactaccacc 1501 ccgctagact acgagaaggt caaagactac accattgaga ttgtggctgt ggactctggc 1561 aaccccccac tctccagcac taactccctc aaggtgcagg tggtggacgt caatgacaac 1621 gcacctgtct tcactcagag tgtcactgag gtcaccttcc cggaaaacaa caagcctggt 1681 gaagtgattg ctgagatcac tgccagtgat gctgactctg gctctaatgc tgagctggtt 1741 tactctctgg agcctgagcc ggctgctaag ggcctcttca ccatctcacc cgagactgga 1801 gagatccagg tgaagacatc tctggatcgg gaacagcggg agagctatga gttgaaggtg 1861 gtggcagctg accggggcag tcctagcctc cagggcacag ccactgtcct tgtcaatgtg 1921 ctggactgca atgacaatga ccccaaattt atgctgagtg gctacaactt ctcagtgatg 1981 gagaacatgc cagcactgag tccagtgggc atggtgactg tcattgatgg agacaagggg 2041 gagaatgccc aggtgcagct ctcagtggag caggacaacg gtgactttgt tatccagaat 2101 ggcacaggca ccatcctatc cagcctgagc tttgatcgag agcaacaaag cacctacacc 2161 ttccagctga aggcagtgga tggtggcgtc ccacctcgct cagcttacgt tggtgtcacc 2221 atcaatgtgc tggacgagaa tgacaacgca ccctatatca ctgccccttc taacacctct 2281 cacaagctgc tgacccccca gacacgtctt ggtgagacgg tcagccaggt ggcagccgag 2341 gactttgact ctggtgtcaa tgccgagctg atctacagca ttgcaggtgg caacccttat 2401 ggactcttcc agattgggtc acattcaggt gccatcaccc tggagaagga gattgagcgg 2461 cgccaccatg ggctacaccg cctggtggtg aaggtcagtg accgcggcaa gcccccacgc 2521 tatggcacag ccttggtcca tctttatgtc aatgagactc tggccaaccg cacgctgctg 2581 gagaccctcc tgggccacag cctggacacg ccgctggata ttgacattgc tggggatcca 2641 gaatatgagc gctccaagca gcgtggcaac attctctttg gtgtggtggc tggtgtggtg 2701 gccgtggcct tgctcatcgc cctggcggtt cttgtgcgct actgcagaca gcgggaggcc 2761 aaaagtggtt accaggctgg taagaaggag accaaggacc tgtatgcccc caagcccagt 2821 ggcaaggcct ccaagggaaa caaaagcaaa ggcaagaaga gcaagtcccc aaagcccgtg 2881 aagccagtgg aggacgagga tgaggccggg ctgcagaagt ccctcaagtt caacctgatg 2941 agcgatgccc ctggggacag tccccgcatc cacctgcccc tcaactaccc accaggcagc 3001 cctgacctgg gccgccacta tcgctctaac tccccactgc cttccatcca gctgcagccc 3061 cagtcaccct cagcctccaa gaagcaccag gtggtacagg acctgccacc tgcaaacaca 3121 ttcgtgggca ccggggacac cacgtccacg ggctctgagc agtactccga ctacagctac 3181 cgcaccaacc cccccaaata ccccagcaag caggtaggcc agccctttca gctcagcaca 3241 ccccagcccc taccccaccc ctaccacgga gccatctgga ccgaggtgtg ggagtgatgg 3301 agcaggttta ctgtgcctgc ccgtgttggg ggccagcctg agccagcagt gggaggtggg 3361 gccttagtgc ctcaccgggc acacggatta ggctgagtga agattaaggg agggtgtgct 3421 ctgtggtctc ctccctgccc tctccccact ggggagagac ctgtgatttg ccaagtccct 3481 ggaccctgga ccagctactg ggccttatgg gttgggggtg gtaggcaggt gagcgtaagt 3541 ggggagggaa atgggtaaga agtctactcc aaacctaggt ctctatgtca gaccagacct 3601 aggtgcttct ctaggaggga aacagggaga cctggggtcc tgtggataac tgagtgggga 3661 gtctgccagg ggagggcacc ttcccattgt gccttctgtg tgtattgtgc attaacctct 3721 tcctcaccac taggcttctg gggctgggtc ccacatgccc ttgaccctga caataaagtt 3781 ctctattttt ggaaaaaaaa aaaaaaaaaa a //