LOCUS BC051193 3878 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens nuclear transcription factor, X-box binding-like 1,
mRNA (cDNA clone MGC:57228 IMAGE:5271401), complete cds.
ACCESSION BC051193
VERSION BC051193.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3878)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3878)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: k Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37674231
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3878
/db_xref="H-InvDB:HIT000053591"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57228 IMAGE:5271401"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3878
/gene="NFXL1"
/gene_synonym="HOZFP"
/gene_synonym="URCC5"
/db_xref="GeneID:152518"
/db_xref="HGNC:HGNC:18726"
CDS 29..2230
/gene="NFXL1"
/gene_synonym="HOZFP"
/gene_synonym="URCC5"
/codon_start=1
/product="NFXL1 protein"
/protein_id="AAH51193.1"
/db_xref="GeneID:152518"
/db_xref="HGNC:HGNC:18726"
/translation="MEASWRQVAGGRGRSRGRATAAPSGNGVHLRGAGGGREKGSVGA
VPSGTSPGGVATTAAAGSRHSPAGSQALQTTAASELMSQKKFEEIKKANQAAARKLVE
EQFSSSSEEGDEDFEGKQGKILANTFITYTTQTDGDTRELERTKQYVNEAFQAGAMTC
LICIASVKRNQAVWSCSGCFCIFHMPCIQKWAKDSQFLVSSVTDDDFGKKDCPWPCPK
CRFEYKRSETPSRYYCYCGKVEDPPLDPWLVPHSCGQVCEREFKPPCGHKCLLLCHPG
PCPPCPKMVTTTCYCKKAKPIPRRCSAKEWSCQLPCGQKLLCGQHKCENPCHAGSCQP
CPRVSRQKCVCGKKVAERSCASPLWHCDQVCGKTLPCGNHTCEQVCHVGACGECPRSG
KRFCPCQKSKFSLPCTEDVPTCGDSCDKVLECGIHRCSQRCHRGPCETCRQEVEKHCR
CGKHTKRMPCHKPYLCETKCVKMRDCQKHQCRRKCCPGNCPPCDQNCGRTLGCRNHKC
PSVCHRGSCYPCPETVDVKCNCGNTKVTVPCGRERTTRPPKCKEQCSRPPTCHHTSQE
KHRCHFGSCPPCHQPCQKVLEKCGHLCPAPCHDQALIKQTGRHQPTGPWEQPSEPAFI
QTALPCPPCQVPIPMECLGKHEVSPLPCHAVGPYSCKRVCGRILDCQNHTCMKECHKV
TKTDGCTGKNKIGKLKLCDLSMILQQESSKSESTVPDLLTPSPMCSSTHVI"
BASE COUNT 1212 a 714 c 875 g 1077 t
ORIGIN
1 ttgtctgttg ggggcgtgcg cagtcgggat ggaagcttcc tggcgccagg tggccggtgg
61 ccgaggccga tcccggggac gggccactgc cgccccctca ggaaatggag tccatctccg
121 cggcgccgga ggagggcgag agaaggggtc ggtgggcgca gttccttctg gcaccagtcc
181 cggaggagtc gcgaccacgg cggctgcagg gagcaggcac agccccgcag gatcccaagc
241 cctgcagact accgcagcca gcgagctaat gtctcagaaa aaatttgaag aaatcaagaa
301 agctaaccaa gctgcagcca gaaaacttgt tgaagaacag tttagctctt catctgaaga
361 aggagatgaa gattttgaag gaaaacaggg aaaaatactt gcaaatacgt ttataacata
421 cactactcag acagatggag atacacgtga attagagcga acaaaacaat atgtaaatga
481 agcttttcaa gcaggggcta tgacatgcct aatttgtatt gcttcggtga agagaaacca
541 agcagtttgg agctgttcgg gatgtttctg tatatttcac atgccctgta tccagaagtg
601 ggctaaagac agccagtttc ttgtatcttc tgtgactgat gatgattttg gaaagaaaga
661 ttgtccctgg ccttgtccaa aatgtaggtt tgaatacaaa cgatctgaaa cacctagtag
721 gtactattgc tattgtggaa aagtagaaga tccaccttta gatccgtggc ttgtgcctca
781 ttcatgtggc caagtatgtg agcgtgaatt taaacctcct tgtggccata aatgtttact
841 cctctgtcat ccaggtccct gccctccttg tccaaagatg gtcacaacta cttgttactg
901 taagaaagca aaacctatcc ctcgtaggtg cagtgccaag gaatggtctt gtcagctgcc
961 atgtggacag aagttgcttt gtgggcaaca taagtgtgaa aatccttgtc atgcaggaag
1021 ctgtcagcct tgtccaagag ttagtagaca aaagtgtgtc tgtggcaaaa aagtagctga
1081 aagaagttgt gcaagtccac tatggcactg tgatcaagta tgtggaaaaa cactgccatg
1141 tggtaatcac acatgtgagc aagtttgcca tgttggtgct tgtggagaat gtcctcgatc
1201 tgggaaaagg ttctgtccat gtcagaaatc aaagttttct ttgccttgta cagaagatgt
1261 accaacttgt ggagacagtt gtgacaaagt acttgaatgc ggaatccata gatgttcaca
1321 gcgttgtcac cgaggtccct gtgaaacatg tagacaagaa gtggaaaagc attgtcgctg
1381 tggaaagcat acaaaacgaa tgccttgtca taaaccttat ctgtgtgaaa ctaagtgtgt
1441 taagatgcgt gactgtcaga agcatcaatg tagaagaaag tgttgccctg gaaactgtcc
1501 accttgtgat caaaactgtg gacggacttt aggatgtaga aaccataagt gtccatctgt
1561 ctgtcacaga ggcagttgct atccctgccc agaaactgta gatgtgaagt gtaattgtgg
1621 caatacaaag gtgacagtgc cctgtggccg agaacgtacc acaagaccac ccaagtgcaa
1681 ggagcaatgc agtcgaccac caacttgtca tcatacaagt caagaaaaac atcgctgtca
1741 ctttggttct tgtccaccat gtcatcaacc ttgccaaaaa gttttggaga aatgtggtca
1801 cttgtgtcct gctccgtgtc atgatcaagc gttaataaag cagactggca ggcaccagcc
1861 tacaggccct tgggaacagc cttctgagcc agcatttatt cagactgcat taccgtgtcc
1921 tccatgtcaa gttcctattc ctatggaatg tcttgggaaa catgaggtga gtccactacc
1981 atgccatgct gtaggaccct actcttgtaa aagagtttgt ggaagaatct tggattgtca
2041 gaatcacaca tgtatgaaag aatgccacaa agtaaccaaa actgatggct gcactggaaa
2101 aaacaagata gggaaactga agctctgtga tttgtccatg attctgcaac aggagagtag
2161 caaatcagaa agtactgtgc ctgatctttt aactcccagc ccaatgtgct cttctactca
2221 tgttatttaa atagaagatt tttgtaggtg taccacatag gaagagcaaa tgaaataaac
2281 tctttaggct ggcccagaat gccttcattg tgaggaaggg tgctccaagt cacggccact
2341 aggttgtctt cacccatgta ttttgcgatg tcaccctgga gaatgtccac cttgtgttca
2401 gatgcttaga ataaaatgtc actgtaagat cacaagcctg tatgtggaat gtagaaaaat
2461 aaccacagct gatgtaaatg aaaagaacct cctcagttgt tgcaaaaatc agtgccctaa
2521 agagcttcct tgtggtcata gatgcaaaga gatgtgtcat cctggtgaat gtccctttaa
2581 ctgcaaccag aaggtaaaac ttagatgtcc ttgtaaaaga ataaaaaagg aattgcagtg
2641 caacaaagta cgtgaaaatc aggtttcaat agaatgtgac acaacgtgca aggaaatgaa
2701 gcggaaagca tctgagataa aagaagcaga agccaaagct gctcttgaag aagaaaaacg
2761 aagacaacag gctgaactag aagcttttga aaacagactg aagggtcgtc ggaagaagaa
2821 caggaaaaga gatgaagtgg cagttgagct atcactatgg caaaaacata aatattatct
2881 catttcagtg tgtggagttg tggttgtagt gtttgcctgg tacatcaccc atgatgtcaa
2941 ttaaaaaaag ttttgatctt ttaatgtaac tcagattgga tttagataag ttgttaaatt
3001 tgaaatatta gaaaatgtat attatagaac atgatatata tttacattca tctctgtatt
3061 ctctcagctg ttgttagaag gacagaatgt taaactttat cttaattagt atactagaaa
3121 gggcagtata ctactgttta aagtgaaggc atgactgaaa ctaaaatatt tcataaggct
3181 tagctagagg cagagtaacg tgtttttgtt cattgggctt ccttgtactt agttttttca
3241 tttaataatt caaaccaaca cttttaaaaa aataattcag atgagactga gccatatctg
3301 cagtaagaga aatatttctt aatgttttgg ttacttatga tagagtactt ttcttgttac
3361 tgttaacttt gtgcttttta aaaaaagtga ttctctaaca gacctcttaa attgtgacat
3421 gaaggtatgt aattagattt cagaaattgg tttattagtg aggaattttt atcaataaat
3481 gtcatggggc gtgttcttca gaatatatag ttattttcaa caaatgccag gctagattcc
3541 tcacatgtgg ctatttctta tgtaagaagc ttttaactga agttggcatg tttcgtaaaa
3601 cttgcgtgtc ttttaaaaat aataaaagga agatgagtat ttatgaagaa tatgtgctga
3661 caacagggct tatgaggtct atgtacctta atctcgtttc tccttaccac aatcttaaat
3721 agatttcagc tgaaaataat cagttcttat gaaaacaaat agagaaatat cagtaagtca
3781 aatctgtttg aattataatt cctttcaaat agttttgcta tttaatttat atgattaatg
3841 ttttcattaa aatttttgat accaaaaaaa aaaaaaaa
//