LOCUS BC051192 2622 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens splicing factor proline/glutamine-rich (polypyrimidine
tract binding protein associated), mRNA (cDNA clone MGC:57191
IMAGE:5262885), complete cds.
ACCESSION BC051192
VERSION BC051192.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2622)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2622)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: h Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4826997.
FEATURES Location/Qualifiers
source 1..2622
/db_xref="H-InvDB:HIT000053590"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57191 IMAGE:5262885"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2622
/gene="SFPQ"
/gene_synonym="POMP100"
/gene_synonym="PSF"
/db_xref="GeneID:6421"
/db_xref="HGNC:HGNC:10774"
/db_xref="MIM:605199"
CDS 96..2219
/gene="SFPQ"
/gene_synonym="POMP100"
/gene_synonym="PSF"
/codon_start=1
/product="splicing factor proline/glutamine-rich
(polypyrimidine tract binding protein associated)"
/protein_id="AAH51192.1"
/db_xref="GeneID:6421"
/db_xref="HGNC:HGNC:10774"
/db_xref="MIM:605199"
/translation="MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNR
GPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPP
PQDSSKPVVAQGPGPAPGVGSTPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSA
PPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKP
GGGPGLSTPGGHPKPPRRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSE
GFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGF
GFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFS
QFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPL
EQLDDEDGLPEKLAQKNPMYQKERETPTRFAQHGTFEYEYSQRWKSLDEMEKQQREQV
EKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLR
QEEERRRREEEMMIRQREMEDQMRRQREESYSRMGYMDPRERDMRMGGGGAMNMGDPY
GSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGSDMRTERFGQGGAGPVGGQGPRG
MGPGTPAGYGRGREEYEGPNKKPRF"
BASE COUNT 709 a 664 c 697 g 552 t
ORIGIN
1 tctgtgtcat ccgccatttt gtgagaagca aggtggcctc cacgtttcct gagcgtcttc
61 ttcgcttttg cctcgaccgc cccttgacca cagacatgtc tcgggatcgg ttccggagtc
121 gtggcggtgg cggtggtggc ttccacaggc gtggaggagg cggcggccgc ggcggcctcc
181 acgacttccg ttctccgccg cccggcatgg gcctcaatca gaatcgcggc cccatgggtc
241 ctggcccggg ccagagcggc cctaagcctc cgatcccgcc accgcctcca caccaacagc
301 agcaacagcc accaccgcag cagccaccgc cgcagcagcc gccaccgcat cagccgccgc
361 cgcatccaca gccgcatcag cagcagcagc cgccgccacc gccgcaggac tcttccaagc
421 ccgtcgttgc tcagggaccc ggccccgctc ccggagtagg cagcacacca ccagcctcca
481 gctcggcccc gcccgccact ccaccaacct cgggggcccc gccagggtcc gggccaggcc
541 cgactccgac cccgccgcct gcagtcacct cggcccctcc cggggcgccg ccacccaccc
601 cgccaagcag cggggtccct accacacctc ctcaggccgg aggcccgccg cctccgcccg
661 cggcagtccc gggcccgggt ccagggccta agcagggccc aggtccgggt ggtcccaaag
721 gcggcaaaat gcctggcggg ccgaagccag gtggcggccc gggcctaagt acgcctggcg
781 gccaccccaa gccgccgcgt cgaggcggcg gggagccccg cgggggccgc cagcaccacc
841 cgccctacca ccagcagcat caccaggggc ccccgcccgg cgggcccggc ggccgcagcg
901 aggagaagat ctcggactcg gaggggttta aagccaattt gtctctcttg aggaggcctg
961 gagagaaaac ttacacacag cgatgtcggt tgtttgttgg gaatctacct gctgatatca
1021 cggaggatga attcaaaaga ctatttgcta aatatggaga accaggagaa gtttttatca
1081 acaaaggcaa aggattcgga tttattaagc ttgaatctag agctttggct gaaattgcca
1141 aagccgaact ggatgataca cccatgagag gtagacagct tcgagttcgc tttgccacac
1201 atgctgctgc cctttctgtt cgtaatcttt caccttatgt ttccaatgaa ctgttggaag
1261 aagcctttag ccaatttggt cctattgaaa gggctgttgt aatagtggat gatcgtggaa
1321 gatctacagg gaaaggcatt gttgaatttg cttctaagcc agcagcaaga aaggcatttg
1381 aacgatgcag tgaaggtgtt ttcttactga cgacaactcc tcgtccagtc attgtggaac
1441 cacttgaaca actagatgat gaagatggtc ttcctgaaaa acttgcccag aagaatccaa
1501 tgtatcaaaa ggagagagaa acccctactc gttttgccca gcatggcacg tttgagtacg
1561 aatattctca gcgatggaag tctttggatg aaatggaaaa acagcaaagg gaacaagttg
1621 aaaaaaacat gaaagatgca aaagacaaat tggaaagtga aatggaagat gcctatcatg
1681 aacatcaggc aaatcttttg cgccaagatc tgatgagacg acaggaagaa ttaagacgca
1741 tggaagaact tcacaatcaa gaaatgcaga aacgtaaaga aatgcaattg aggcaagagg
1801 aggaacgacg tagaagagag gaagagatga tgattcgtca acgtgagatg gaagaccaaa
1861 tgaggcgcca aagagaggaa agttacagcc gaatgggcta catggatcca cgggaaagag
1921 acatgcgaat gggtggcgga ggagcaatga acatgggaga tccctatggt tcaggaggcc
1981 agaaatttcc acctctagga ggtggtggtg gcataggtta tgaagctaat cctggcgttc
2041 caccagcaac catgagtggt tccatgatgg gaagtgacat gcgtactgag cgctttgggc
2101 agggaggtgc ggggcctgtg ggtggacagg gtcctagagg aatggggcct ggaactccag
2161 caggatatgg tagagggaga gaagagtacg aaggcccaaa caaaaaaccc cgattttaga
2221 tgtgatattt aggctttcat tccagtttgt tttgtttttt tgtttagata ccaatctttt
2281 aaattcttgc attttagtaa gaaagctatc tttttatgga tgttagcagt ttattgacct
2341 aatatttgta aatggtctgt ttgggcaggt aaaattatgt aatgcagtgt ttggaacagg
2401 agaatttttt tttccttttt atttctttat tttttctttt ttactgtata atgtccctca
2461 agtttatggc agtgtacctt gtgccactga atttccaaag tgtaccaatt tttttttttt
2521 tactgtgctt caaataaata gaaaaatagt tataaaaaaa aaaaaaaaaa aaaaaaaaaa
2581 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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