LOCUS BC050713 1127 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:60323 IMAGE:5741129), complete cds.
ACCESSION BC050713
VERSION BC050713.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1127)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1127)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC050713.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: f Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34452692.
FEATURES Location/Qualifiers
source 1..1127
/db_xref="H-InvDB:HIT000053568"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60323 IMAGE:5741129"
/tissue_type="Duodenum, adenocarcinoma"
/clone_lib="NIH_MGC_88"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1127
/gene="VPS28"
/gene_synonym="MGC60323"
/db_xref="GeneID:51160"
/db_xref="HGNC:HGNC:18178"
CDS 58..759
/gene="VPS28"
/gene_synonym="MGC60323"
/codon_start=1
/product="vacuolar protein sorting 28 homolog (S.
cerevisiae)"
/protein_id="AAH50713.1"
/db_xref="GeneID:51160"
/db_xref="HGNC:HGNC:18178"
/translation="MFHGIPATPGIGAPGNKPELYEEVKLYKNAREREKYDNMAELFA
VVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLD
CPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLREL
METMHRMSHLPPDFEGRQTVSQWWVSLPARQSPAVPETLPARRSPAVPLRPSAPTCPV
LHSQAADPERHVGVR"
BASE COUNT 308 a 344 c 297 g 178 t
ORIGIN
1 cttcccgacc gcgagccgtc caggtctcag tgctgtgccc cccccagagc ctagaggatg
61 tttcatggga tcccagccac gccgggcata ggagcccctg ggaacaagcc ggagctgtat
121 gaggaagtga agttgtacaa gaacgcccgg gagagggaga agtacgacaa catggcagag
181 ctgtttgcgg tggtgaagac aatgcaagcc ctggagaagg cctacatcaa ggactgtgtc
241 tcccccagcg agtacactgc agcctgctcc cggctcctgg tccaatacaa agctgccttc
301 aggcaggtcc agggctcaga aatcagctct attgacgaat tctgccgcaa gttccgcctg
361 gactgcccgc tggccatgga gcggatcaag gaggaccggc ccatcaccat caaggacgac
421 aagggcaacc tcaaccgctg catcgcagac gtggtctcgc tcttcatcac ggtcatggac
481 aagctgcgcc tggagatccg cgccatggat gagatccagc ccgacctgcg agagctgatg
541 gagaccatgc accgcatgag ccacctccca cccgactttg agggccgcca gacggtcagc
601 cagtggtggg tgtccctccc agccaggcag agccccgcag tgcccgagac cctcccagcc
661 aggcggagcc ccgcagtgcc cctgaggccc tcagccccca catgccctgt gctgcactcc
721 caggctgcag accctgagcg gcatgtcggc gtcagatgag ctggacgact cacaggtgcg
781 tcagatgctg ttcgacctgg agtcagccta caacgccttc aaccgcttcc tgcatgcctg
841 agcccggggc actagccctt gcacagaagg gcagagtctg aggcgatggc tcctggtccc
901 ctgtccgcca cacaggccgt ggtcatccac acaactcact gtctgcagct gcctgtctgg
961 tgtctgtctt tggtgtcaga actttggggg ccgggcccct ccccacaata aagatgctct
1021 ccgaccttca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1081 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//