LOCUS BC050597 1171 bp mRNA linear HUM 06-OCT-2006
DEFINITION Homo sapiens programmed cell death 6, mRNA (cDNA clone
IMAGE:6143644), complete cds.
ACCESSION BC050597
VERSION BC050597.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1171)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1171)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: j Column: 1
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1171
/db_xref="H-InvDB:HIT000053509"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6143644"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1171
/gene="PDCD6"
/gene_synonym="ALG-2"
/gene_synonym="MGC9123"
/gene_synonym="PEF1B"
/db_xref="GeneID:10016"
/db_xref="HGNC:HGNC:8765"
/db_xref="MIM:601057"
CDS 65..232
/gene="PDCD6"
/gene_synonym="ALG-2"
/gene_synonym="MGC9123"
/gene_synonym="PEF1B"
/codon_start=1
/product="PDCD6 protein"
/protein_id="AAH50597.1"
/db_xref="GeneID:10016"
/db_xref="HGNC:HGNC:8765"
/db_xref="MIM:601057"
/translation="MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVIS
DTELQQALSNG"
BASE COUNT 298 a 275 c 274 g 324 t
ORIGIN
1 cggagtcggc ctgagaggtc tctcgtcgct gcaggcgcct cagcccagcc gcgtgccttg
61 gcccatggcc gcctactctt accgccccgg ccctggggcc ggccctgggc ctgctgcagg
121 cgcggcgctg ccggaccaga gcttcctgtg gaacgttttc cagagggtcg ataaagacag
181 gagtggagtg atatcagaca ccgagcttca gcaagctctc tccaacggat gaagccccac
241 ccgcccttca ggatgccagc cttggcaaca ttgtgagacc ctgtttctac aaaaagtaaa
301 tgagtgtagt ggtgcacgcc tgtattccca gctacttggg aggctgagat gggaagatca
361 cttgagcctg ggaggttgag gctgcattga gctgagatca agccacggca ctccagcctg
421 ggagacagag cgaaacccca tctcaaaaaa acaaagaaag tggatgcgcg ctgctcctgc
481 cattggatca tcgcagcatt tttcttttct ctgatatgca cctttttcct catcgtgggg
541 gctcacgttt tcatagttcc ctctcactac taggttgtga gctgcgtgaa ggaaggttca
601 tagttgtgtt gtatgtacag gcacacaaaa tttgtccttg gataaacaca tatcctcttc
661 cttcttctct ctgaatttct ttattttaag aaaaaaatta gagatggagt ctcactgtct
721 tgctcaggct ggtctcaaac tcctgggctc aagtgatcct cctgcctcag cctatactaa
781 tatgaattcc tatactaata tgattgaaat tagtttgatt tctataataa ttgtgctccc
841 agattgggct tctgttttga tagtagaact aaattattag gctatttcaa gaaattaata
901 tattactggt agaaaaactg aagctacaaa atggcctggt ttctcacttc agttaaattt
961 gtgcttctga gtgcttgtat tctaggtgaa accacactga gaaggtattt gtggcccata
1021 cactgattcc ttcatgagac ttgtttgcac aggagagctg ctaaaaatta ctgctctcag
1081 ggaggtctgt ggtgaacagg tatgaagaag aagactgttc tctgcccttc tttttgcaat
1141 aaaatgttcc aaactaaaaa aaaaaaaaaa a
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