LOCUS BC050596 2091 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens apolipoprotein L, 3, mRNA (cDNA clone MGC:60037
IMAGE:6012757), complete cds.
ACCESSION BC050596
VERSION BC050596.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2091)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2091)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: h Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22035651.
FEATURES Location/Qualifiers
source 1..2091
/db_xref="H-InvDB:HIT000099236"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60037 IMAGE:6012757"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2091
/gene="APOL3"
/gene_synonym="APOLIII"
/gene_synonym="CG12-1"
/db_xref="GeneID:80833"
/db_xref="HGNC:HGNC:14868"
/db_xref="MIM:607253"
CDS 209..1204
/gene="APOL3"
/gene_synonym="APOLIII"
/gene_synonym="CG12-1"
/codon_start=1
/product="apolipoprotein L, 3"
/protein_id="AAH50596.1"
/db_xref="GeneID:80833"
/db_xref="HGNC:HGNC:14868"
/db_xref="MIM:607253"
/translation="MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAEL
PRDEADALYEALKKLRTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRAL
ANGIEEVHRGCTISNVVSSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASA
VTGITTSIVEHSYTSSAEAEASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQ
TIGSEIRAIRQARARARLPVTTWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGI
FLALDVVNLVYESKHLHEGAKSASAEELRRQAQELEENLMELTQIYQRLNPCHTH"
BASE COUNT 587 a 476 c 584 g 444 t
ORIGIN
1 ggtatatctc agagcctgga gaacgtgtct ggttattatg cagatgcacg gctggaggtg
61 ggatccacac agctcagaac agctggatct tgctcacact ctttcaagag aagcttcctt
121 gggttaagaa aaaaaacgaa cccttccagt caggtcagtg actggagagc tccatggaaa
181 gtctctcagt gacctggctg ctggcaccat ggactcagaa aagaaacgct ttactgaaga
241 ggccaccaaa tacttccggg agagagtcag cccagtgcat ctgcaaatcc tgctgactaa
301 caatgaagcc tggaagagat tcgtgactgc ggctgaattg cccagggatg aggcagatgc
361 tctctacgaa gctctgaaga agcttagaac atatgcagct attgaggacg aatatgtgca
421 gcagaaagat gagcagttta gggaatggtt tttgaaagag tttccccaag tcaagaggaa
481 gatccaggag tccatagaaa agcttcgtgc ccttgcaaat ggtattgaag aggtccacag
541 aggctgcacc atctccaatg tggtgtccag ctccactggc gctgcctctg gcatcatgtc
601 ccttgctggt cttgttttgg caccatttac agcagggacg agtctggccc ttactgcagc
661 tggggtaggg ctgggagcag cgtctgctgt gactgggatc accaccagca tcgtggagca
721 ctcatacaca tcatcagcag aagctgaagc cagcaggctg actgcaacca gcattgaccg
781 attgaaggta tttaaggaag ttatgcgtga catcacaccc aacttacttt cccttcttaa
841 taattattac gaagccacac aaaccattgg gagtgaaatc cgtgccatca ggcaagccag
901 agccagggcc cgactccctg tgaccacctg gcgaatctca gctggaagtg gtggtcaagc
961 agagagaacg attgcaggca ccacccgggc agtgagcaga ggagcccgga tcctgagtgc
1021 gaccacttca ggcatcttcc ttgcactgga tgtggtcaac cttgtatacg agtcaaagca
1081 cttgcatgag ggggcaaagt ctgcatctgc tgaggagctg aggcggcagg ctcaggagct
1141 ggaggagaat ctaatggagc tcactcagat ctatcagcgt ctgaatccat gccataccca
1201 ctgaccccag accagtgcag ccagcagggg aggtgagcca tacacaggcc acgacaaaat
1261 gcaggcattt tattaggggg ataaagaggg caaggtaaag tttatggagc tgagtgttag
1321 tgactttggc atttctgtag ctgagcacag caggggaggg gttaatgcag atggcaagtg
1381 caccaaggag aaggcaggaa tgctggagcc tggaataagg gaggagaggg gactggagag
1441 tgtggggaat aggaagaaga aatttccttt agactaacga atatattggg gggaggaata
1501 gaggggaggt gtgcaggaac cagcaatgag aaggccagga aaagaaagag ctgaaaatgc
1561 agaaagccga agagttagaa cttttggata cagcagaaga aacagcggct ccactaccga
1621 cctgcccccg gttcgatgtc cttccaagaa tgaagtcttt ccctggtgat ggtcccctgc
1681 cctgtctttc cagcatccac tctgtcttgt cctcctggaa gtgtatctca gtcagccagt
1741 ggcttcttga tgatggcggt ggaggtggtg gttgtagtgt gatggatccc ctttaggtta
1801 tttaggggta tatgtcccct gcttgaaccc tgaaggccag gtaatgagcc atggccattg
1861 tccccagctg aggaccaggt gtctctaaaa acccaaacat cctggagagt atgcgagaac
1921 ctaccaagaa aaacagtctc attactcata tacagcaggc aaagagacag aaaattaact
1981 gaaaagcagt ttagagactg ggggaggccg gatctctaga gccatcctgc tgagtgccct
2041 gtgtgtaagt cctaataaac tcacctactc accaaaaaaa aaaaaaaaaa a
//