LOCUS BC050590 1941 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sorting nexin 17, mRNA (cDNA clone MGC:60025 IMAGE:6044270), complete cds. ACCESSION BC050590 VERSION BC050590.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1941) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1941) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 110 Row: i Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23238249. FEATURES Location/Qualifiers source 1..1941 /db_xref="H-InvDB:HIT000053506" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:60025 IMAGE:6044270" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1941 /gene="SNX17" /gene_synonym="KIAA0064" /db_xref="GeneID:9784" /db_xref="HGNC:HGNC:14979" /db_xref="MIM:605963" CDS 104..1516 /gene="SNX17" /gene_synonym="KIAA0064" /codon_start=1 /product="sorting nexin 17" /protein_id="AAH50590.1" /db_xref="GeneID:9784" /db_xref="HGNC:HGNC:14979" /db_xref="MIM:605963" /translation="MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLH EQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFL RRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYF SLFLVREKEDGAFSFVRKLQEFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENR VGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDA CVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGST SSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSI RKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPSTD ASASDVHGNFAFEGIGDEDL" BASE COUNT 419 a 516 c 568 g 438 t ORIGIN 1 ggcgagtgag gctgcgggga ctcgctgagc agcggagggg gagcgtgcag agccgctgcg 61 gccctcacag tccggagccc ggccgtgccg tgccgtaggg aacatgcact tttccattcc 121 cgaaaccgag tcccgcagcg gggacagcgg cggctccgcc tacgtggcct ataacattca 181 cgtgaatgga gtcctgcact gtcgggtgcg ctacagccag ctcctggggc tgcacgagca 241 gcttcggaag gagtatgggg ccaatgtgct tcctgcattc cccccaaaga agcttttctc 301 tctgactcct gctgaggtag aacagaggag agagcagtta gagaagtaca tgcaagctgt 361 tcggcaagac ccattgcttg ggagcagcga gactttcaac agtttcctgc gtcgggcaca 421 acaggagaca cagcaggtcc ccacagagga agtgtccttg gaagtgctgc tcagcaacgg 481 gcagaaagtt ctggtcaacg tgctaacttc agatcagact gaggatgtcc tggaggctgt 541 agctgcaaag ctggatcttc cagatgactt gattggatac tttagtctat tcttagttcg 601 agaaaaagag gatggagcct tttcttttgt acggaagttg caagagtttg agctgcctta 661 tgtgtctgtc accagccttc ggagtcaaga gtataagatt gtgctaagga agagttattg 721 ggactctgcc tatgatgacg atgtcatgga gaaccgggtt ggcctgaacc tgctttatgc 781 tcagacggta tcagatattg agcgtgggtg gatcttggtc accaaggaac agcaccggca 841 actcaaatct ctgcaagaga aagtctccaa gaaggagttc ctgagactgg cccagacgct 901 gcggcactat ggctacttgc gctttgatgc ctgtgtggct gacttcccag aaaaggactg 961 tcctgtggtg gtgagcgcgg gcaacagtga gctcagcctg cagctccgcc tgcctggcca 1021 gcaactccga gaaggctcct tccgggtcac ccgcatgcga tgctggcggg tcacctcctc 1081 tgtaccattg cccagtggaa gcacgagcag cccaggccgg ggccggggtg aggtgcgcct 1141 ggaactggct tttgaatacc tcatgagcaa ggaccggcta cagtgggtca ccatcactag 1201 cccccaggct atcatgatga gcatctgctt gcagtccatg gttgatgaac tgatggtgaa 1261 gaaatctggc ggcagtatca ggaagatgct gcgccggcgg gtggggggta ctctgagacg 1321 ctcagacagc cagcaagcag tgaagtcccc accactgctt gagtcacctg atgccacccg 1381 ggagtctatg gtcaaactct caagtaagct gagtgccgtg agcttgcggg gaattggcag 1441 tcccagcaca gatgccagtg ccagtgatgt ccacggcaat ttcgccttcg agggcattgg 1501 agatgaggat ctgtaatctc cactgcttgg atgtctgccc tctaccccag aggaatttac 1561 agaaacttgc cctgtgcctg tgtcccccat gctaggggcg gaggggtctt ttccttcttc 1621 tttcctacct accccttttc tcttggccag gggcctcgta tcctaccttt ccttgtcccc 1681 tgggctggct gcacagagga ttgccccttc tcttttcaga gctggccctc gatgccaaat 1741 tagcatttag tattttgcac aaagtctaag ggaccatggc tgcctgcctt ggggaggaac 1801 catagctccc tctgggccgc ttctggcctc ttggagccat gggccaaagg ccaaggggat 1861 gggcagaggt ctgtgtttgg tctggcccag ttccccatca ttaaactcag cctgactgct 1921 gcctacaaaa aaaaaaaaaa a //