LOCUS BC050561 3746 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens nuclear protein, ataxia-telangiectasia locus, mRNA
(cDNA clone IMAGE:5553400), partial cds.
ACCESSION BC050561
VERSION BC050561.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3746)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3746)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC050561.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: g Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505430.
FEATURES Location/Qualifiers
source 1..3746
/db_xref="H-InvDB:HIT000099222"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5553400"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>3746
/gene="NPAT"
/gene_synonym="E14"
/db_xref="GeneID:4863"
/db_xref="MIM:601448"
CDS 88..>3746
/gene="NPAT"
/gene_synonym="E14"
/codon_start=1
/product="NPAT protein"
/protein_id="AAH50561.1"
/db_xref="GeneID:4863"
/db_xref="MIM:601448"
/translation="MLLPSDVARLVLGYLQQENLISTCQTFILESSDLKEYAEHCTDE
GFIPACLLSLFGKNLTTILNEYVAMKTKETSNNVPAIMSSLWKKLDHTLSQIRSMQSS
PRFAGSQRARTRTGIAEIKRQRKLASQTAPASAELLTLPYLSGQFTTPPSTGTQVTRP
SGQISDPSRSYFVVVNHSQSQDTVTTGEALNVIPGAQEKKAHASLMSPGRRKSESQRK
STTLSGPHSTIRNFQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDNN
IAQVPKQTDNNPTEPETSIDEFLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFDY
GKTKNNKNISQSISSQPMESNPSIVLADETNLAVKGSFETEESDGQSGQPAFCTSYQN
DDPLNALKNSNNHDVLRQEDQENFSQISTSIQKKAFKTAVPTEQKCDIDITFESVPNL
NDFNQRGNSNAECNPHCAELYTNQMSTETEMAIGIEKNSLSSNVPSESQLQPDQPDIP
ITSFVSLGCEANNENLILSGKSSQLLSQDTSLTGKPSKKSQFCENSNDTVKLKINFHG
SKSSDSSEIHKSKIEINVLEPVMSQLSNCQDNSCLQSEILPVSVESSHLNVSGQVEIH
LGDSLSSTKQPSNDSASVELNHTENEAQASKSENSQEPSSSVKEENTIFLSLGGNANC
EKVALTPPEGTPVENSHSLPPESVCSSVGDSHPESQNTDDKPSSNNSAEIDASNIVSL
KVIISDDPFVSSDTELTSAVSSINGENLPTIILSSPTKSPTKNAELVKCLSSEETVGA
VVYAEVGDSASMEQSLLTFKSEDSAVNNTQNEDGIAFSANVTPCVSKDGGYIQLMPAT
STAFGNSNNILIATCVTDPTALGTSVSQSNVVVLPGNSAPMTAQPLPPQLQTPPRSNS
VFAVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNNFSTPPRQVLHMP
LTAPVCNRSIPQFPVPPKSQKAQGLRNKPCIGKQVNNLVDSSGHSVGCHAQKTEVSDK
SIATDLGKKSEETTVPFPEESIVPAAKPCHRRVLCFDSTTAPVANTQGPNHKMVSQNK
ERNAVSFPNLDSPNVSSTLKPPSNNAIKREKEKPPLPKILSKSESAISRHTTIRETQS
EKKVSPTEIVLESFHKATANKENELCSDVERQKNPENSKLSIGQQNGGLRSEKSIASL
QEMTKKQGTSSKKKK"
BASE COUNT 1258 a 791 c 688 g 1009 t
ORIGIN
1 tccggacgcg tgggcgcagg agctgtcgct gtgtttgctt taacctgagt cttgttcctt
61 attgtggttc ctgctgtggt tttgatcatg ttgttaccct cggacgtagc ccggcttgta
121 ttgggttact tacagcaaga aaacctcatt tctacctgcc agacttttat tttggaaagt
181 tcagatttaa aagaatatgc agaacattgt acagatgaag ggtttattcc agcctgctta
241 ctgtccttat ttggaaaaaa cttgacaaca attttaaatg agtatgtagc tatgaaaaca
301 aaagaaacat caaataatgt cccagcaata atgtcatctc tatggaagaa attggaccat
361 acactttctc agatcaggag catgcaaagt tccccaaggt ttgctggcag tcagagagcc
421 cgaacgagaa ctggaattgc agaaatcaaa cggcagagaa agcttgcatc tcaaacagct
481 ccagccagtg cagagttgct cactttacct tacctttcag gacagtttac cactcctcct
541 tccacaggta cacaggttac tcgaccaagt ggccaaattt cagatccatc gaggtcatat
601 tttgtagtgg tcaaccactc acagtcacaa gatactgtaa ccactggaga agctttaaat
661 gtcattcctg gtgctcagga aaagaaagca catgccagtt taatgtctcc cggtagacgc
721 aaaagtgaat ctcagagaaa aagtaccact ttgtctggcc ctcattcaac aatacggaat
781 ttccaagatc caaacgcttt tgcagtagaa aaacaaatgg ttattgaaaa tgcacgagaa
841 aaaatactaa gcaacaaatc tcttcaagaa aagctagcag aaaacataaa taaattttta
901 actagtgata acaatattgc ccaagtacct aagcaaacag ataacaatcc tacggagcca
961 gagacttcaa ttgatgaatt cctaggactt ccgagtgaaa ttcacatgtc tgaagaagct
1021 atacaggaca tattggaaca gacagaatca gacccagcat ttcaggcact ctttgatctc
1081 tttgactatg gcaaaacaaa gaataataaa aatatatcac aaagtatttc cagtcaacct
1141 atggaatcca atcccagtat agtcttagca gatgaaacta atctagcagt taaaggttct
1201 tttgaaacag aagaatctga tggtcagtct ggtcagcccg ctttttgtac atcctatcag
1261 aatgatgacc cattaaatgc tttgaagaat agcaacaacc atgatgtgct tagacaagaa
1321 gaccaggaaa atttttccca aataagtacc agcatacaga aaaaggcctt taaaacagct
1381 gtacccactg aacagaagtg tgacattgac attacctttg agtccgtgcc taatttgaat
1441 gactttaacc aaagagggaa ttctaatgct gaatgtaatc cacattgtgc tgaattatac
1501 accaatcaga tgtccactga aactgaaatg gctataggga ttgaaaagaa ctctttgtct
1561 tcaaatgtac cgagtgaatc tcagttacag cctgatcagc ctgatatacc aataacttca
1621 tttgtttcac ttggttgtga agctaacaat gaaaacttaa ttctctctgg gaagagttct
1681 caacttttat cccaagatac ttcattaact ggaaagccat ctaaaaaaag tcaattttgt
1741 gaaaattcta atgatacagt aaaacttaaa attaattttc atggttccaa gtcatcagat
1801 tctagtgaaa ttcacaagag taaaatagaa attaatgtgt tagaaccagt tatgtcacag
1861 ctatcaaatt gccaagataa ttcttgtctt caaagtgaaa tactacctgt gtctgttgaa
1921 agttcacatt taaatgtatc tggacaagta gaaattcatc ttggagattc gctgtcttct
1981 actaaacaac catctaatga ttcagcatct gttgagttaa atcatacaga aaatgaagct
2041 caggcatcca agtctgagaa ttcacaggag ccttcatctt ctgtaaaaga agagaatact
2101 atttttctct ctttaggtgg aaatgctaac tgtgagaaag ttgcactgac gcctccagaa
2161 ggcactcctg tagaaaacag tcactctctt cctccagaat ctgtgtgttc ttcagtggga
2221 gattctcacc ctgagtccca aaatactgat gataaacctt ctagcaacaa ctcagcagag
2281 atagatgcat caaatatcgt ctctctcaaa gttatcatta gtgatgatcc atttgtttcc
2341 tcagatactg aacttaccag tgctgtttct agtattaatg gagaaaacct gccaactata
2401 atcttgtctt ctcctactaa atcacctact aaaaatgcag aactagttaa atgcctatct
2461 tcagaagaaa ctgtaggtgc tgttgtatat gccgaagtag gggattcagc ctcaatggaa
2521 cagagtcttt taacattcaa atctgaagac tctgcagtaa acaatactca gaatgaagat
2581 ggcattgctt tttcagctaa tgttacacca tgtgtttcca aggatggagg atatatacag
2641 ttgatgccag ccacaagcac agcttttggc aattcaaata acattctgat agctacctgt
2701 gtgactgatc caacagcgtt aggaacatct gtaagtcagt ctaatgtagt ggtgttgcct
2761 ggaaattctg cacctatgac tgctcaacct ctaccacctc agttacagac accaccaagg
2821 tcaaacagtg tatttgctgt caaccaagct gtgtcaccaa acttttcaca aggatctgcc
2881 ataataattg cctctccagt ccagcctgta ctccaaggaa tggtagggat gatcccagta
2941 tctgtggttg gacagaatgg aaataacttt tctactcctc ctcggcaggt tcttcatatg
3001 cctttgacag cacctgtatg caatagaagt atccctcaat tccccgtccc tccaaaatct
3061 cagaaggctc agggactaag aaacaagcct tgtataggaa aacaagtaaa taatttggtg
3121 gattcgtcag gtcattcagt tggatgtcat gcacaaaaaa ctgaagtttc tgacaaaagt
3181 attgccacag atcttgggaa aaaatcagaa gaaaccacag ttcccttccc agaagagagt
3241 atagttccag ctgctaaacc atgccacaga cgtgtactct gtttcgacag cactactgct
3301 cctgtggcaa atacgcaggg gccaaaccat aagatggtgt cccaaaacaa agaaaggaat
3361 gcagtctctt ttcctaatct tgactcaccc aatgtgtcct ccaccttaaa acccccttct
3421 aataatgcta tcaaaagaga gaaagagaag cctcctctgc ctaagatttt atctaaatcg
3481 gaaagtgcca ttagccggca taccaccata agagaaactc aatcagaaaa gaaagtttca
3541 ccaacagaaa ttgtgcttga atctttccat aaagcaacag ctaataagga gaatgaatta
3601 tgcagcgatg tagaaagaca gaaaaatcca gaaaattcaa aactatctat tgggcagcaa
3661 aatgggggtt tgcgaagtga gaaatctata gcttcactgc aagaaatgac caaaaaacaa
3721 ggcacatctt caaaaaaaaa aaaaaa
//