LOCUS BC050549 4002 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens amine oxidase, copper containing 3 (vascular adhesion
protein 1), mRNA (cDNA clone MGC:57642 IMAGE:6193046), complete
cds.
ACCESSION BC050549
VERSION BC050549.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4002)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4002)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: n Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6806883.
FEATURES Location/Qualifiers
source 1..4002
/db_xref="H-InvDB:HIT000053490"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57642 IMAGE:6193046"
/tissue_type="Peripheral Nervous System, sympathetic
trunk"
/clone_lib="Lupski_sympathetic_trunk"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4002
/gene="AOC3"
/gene_synonym="HPAO"
/gene_synonym="SSAO"
/gene_synonym="VAP-1"
/gene_synonym="VAP1"
/db_xref="GeneID:8639"
/db_xref="HGNC:HGNC:550"
/db_xref="MIM:603735"
CDS 111..2402
/gene="AOC3"
/gene_synonym="HPAO"
/gene_synonym="SSAO"
/gene_synonym="VAP-1"
/gene_synonym="VAP1"
/codon_start=1
/product="amine oxidase, copper containing 3 (vascular
adhesion protein 1)"
/protein_id="AAH50549.1"
/db_xref="GeneID:8639"
/db_xref="HGNC:HGNC:550"
/db_xref="MIM:603735"
/translation="MNQKTILVLLILAVITIFALVCVLLVGRGGDGGEPSQLPHCPSV
SPSAQPWTHPGQSQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQ
LPPKAAALAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERH
GGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTAPRGL
QSGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQ
LEAQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSL
WTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAMTTRYVDGGFGMG
KYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPLRRHHSDLYSH
YFGGLAETVLVVRSMSTLLNYDYVWDTVFHPSGAIEIRFYATGYISSAFLFGATGKYG
NQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTR
KLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARG
FSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKDLVAWVTAGF
LHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPSFYSADSIYFRGDQDAGACEVNPLA
CLPQAAACAPDLPAFSHGGFSHN"
BASE COUNT 828 a 1162 c 1088 g 924 t
ORIGIN
1 gagtccggga gccccccacc ccgtccagga gccaacagag cccccgtctt gctggcgtga
61 gaatacattg ctctcctttg gttgaatcag ctgtccctct tcgtgggaaa atgaaccaga
121 agacaatcct cgtgctcctc attctggccg tcatcaccat ctttgccttg gtttgtgtcc
181 tgctggtggg caggggtgga gatgggggtg aacccagcca gcttccccat tgcccctctg
241 tatctcccag tgcccagcct tggacacacc ctggccagag ccagctgttt gcagacctga
301 gccgagagga gctgacggct gtgatgcgct ttctgaccca gcggctgggg ccagggctgg
361 tggatgcagc ccaggcccgg ccctcggaca actgtgtctt ctcagtggag ttgcagctgc
421 ctcccaaggc tgcagccctg gctcacttgg acagggggag ccccccacct gcccgggagg
481 cactggccat cgtcttcttt ggcaggcaac cccagcccaa cgtgagtgag ctggtggtgg
541 ggccactgcc tcacccctcc tacatgcggg acgtgactgt ggagcgtcat ggaggccccc
601 tgccctatca ccgacgcccc gtgctgttcc aagagtacct ggacatagac cagatgatct
661 tcaacagaga gctgccccag gcttctgggc ttctccacca ctgttgcttc tacaagcacc
721 ggggacggaa cctggtgaca atgaccacgg ctccccgtgg tctgcaatca ggggaccggg
781 ccacctggtt tggcctctac tacaacatct cgggcgctgg gttcttcctg caccacgtgg
841 gcttggagct gctagtgaac cacaaggccc ttgaccctgc ccgctggact atccagaagg
901 tgttctatca aggccgctac tacgacagcc tggcccagct ggaggcccag tttgaggccg
961 gcctggtgaa tgtggtgctg atcccagaca atggcacagg tgggtcctgg tccctgaagt
1021 cccctgtgcc cccgggtcca gctccccctc tacagttcta tccccaaggc ccccgcttca
1081 gtgtccaggg aagtcgagtg gcctcctcac tgtggacttt ctcctttggc ctcggagcat
1141 tcagtggccc aaggatcttt gacgttcgct tccaaggaga aagactagtt tatgagataa
1201 gcctccaaga ggccttggcc atctatggtg gaaattcccc agcagcaatg acgacccgct
1261 atgtggatgg aggctttggc atgggcaagt acaccacgcc cctgacccgt ggggtggact
1321 gcccctactt ggccacctac gtggactggc acttcctttt ggagtcccag gcccccaaga
1381 caatacgtga tgccttttgt gtgtttgaac agaaccaggg cctccccctg cggcgacacc
1441 actcagatct ctactcgcac tactttgggg gtcttgcgga aacggtgctg gtcgtcagat
1501 ctatgtccac cttgctcaac tatgactatg tgtgggatac ggtcttccac cccagtgggg
1561 ccatagaaat acgattctat gccacgggct acatcagctc ggcattcctc tttggtgcta
1621 ctgggaagta cgggaaccaa gtgtcagagc acaccctggg cacggtccac acccacagcg
1681 cccacttcaa ggtggatctg gatgtagcag gactggagaa ctgggtctgg gccgaggata
1741 tggtctttgt ccccatggct gtgccctgga gccctgagca ccagctgcag aggctgcagg
1801 tgacccggaa gctgctggag atggaggagc aggccgcctt cctcgtggga agcgccaccc
1861 ctcgctacct gtacctggcc agcaaccaca gcaacaagtg gggtcacccc cggggctacc
1921 gcatccagat gctcagcttt gctggagagc cgctgcccca aaacagctcc atggcgagag
1981 gcttcagctg ggagaggtac cagctggctg tgacccagcg gaaggaggag gagcccagta
2041 gcagcagcgt tttcaatcag aatgaccctt gggcccccac tgtggatttc agtgacttca
2101 tcaacaatga gaccattgct ggaaaggatt tggtggcctg ggtgacagct ggttttctgc
2161 atatcccaca tgcagaggac attcctaaca cagtgactgt ggggaacggc gtgggcttct
2221 tcctccgacc ctataacttc tttgacgaag acccctcctt ctactctgcc gactccatct
2281 acttccgagg ggaccaggat gctggggcct gcgaggtcaa ccccctagct tgcctgcccc
2341 aggctgctgc ctgtgccccc gacctccctg ccttctccca cgggggcttc tctcacaact
2401 aggcggtcct gggatggggc atgtggccaa gggctccagg gccagggtgt gagggatggg
2461 gagcagctgg gcactgggcc ggcagcctgg ttccctcttt cctgtgccag gactctcttt
2521 cttccactac cctccctcgc atccgcctct gagccaggag cctcctgacc ctgtgatgcc
2581 tgacacaggg gacactgaac cttgttgatg ccagctgtac tgagttctca tccacagagg
2641 ccaggcatgg cccagcctgg agccgtggcc gagggcttcc ctagatggtt ccctttgttg
2701 ctgtctggct ttcccgaatc tttttaggcc acctccaagg actctaaaag ggggctattc
2761 cctggagacc ccagagtagg gttgccagtc ctgcaagtcc atagctgagc tggaaaggat
2821 gcttctgctc acattccctc tcatccaggt cctttccttc tcgtcttcct ctctctcacc
2881 tacttcctcc tcctcctcct gttcctgcct tctcttctat cctgcaattt ctcccgaatc
2941 ctgaggggat atccctatgt cccagcccct ggtactcccc cagccctcag ttttcagtca
3001 agttccgtct cctctccagc cctatggaag tctcaaggtc acgggacccc taatcagagt
3061 ggccaatccc tgtgtgtcgt tcccttgtgt ctgttgctta ttgggagtag gagttgctcc
3121 tacccctgtc ctggggctgg gtgtgtttca ggacagctgc ttctgtgcat ttgtgtctgc
3181 ctgcctcatg ctctctatag aggaggatgg tcatcgtgac agcagcagct caagttagca
3241 tttcaagtga tttgggggtg caatgataat gaagaatggc cattttgtac cagggctctg
3301 tattctgcaa cagcctgttt gggaggctgg agtggaaaca aagggtgggc atcaaagatg
3361 agaagccaaa gcccctacaa ctccagccac ccagccagga ggggctgtcc aatcacattc
3421 aggcatgcga atgagctggg ccctgggtga ggtgggggtc tggcctagtg gggaggggcc
3481 tggcctgggt ggggcagggc ctggcctggt ccaggcttgg gctccattcc catcactgct
3541 gtccctcctg aggtctggat tggggatggg gacaaagaaa tagcaagaga tgagaaacaa
3601 cagaaacttt tttctctaaa ggactggtta aatcaattct gatacagcct tacaatacaa
3661 tagtatgcag ctaaaaaata attgtatgtc tttatatact aatatgtaat aatcttcagg
3721 tgaaaaaggc aagccacaga aatgtgtata gcgcacttcc catttgtgtt tcagaaagga
3781 gtagaatata aacacataat tgcttatgta tgcctattca gaataaatgg gtaacactga
3841 ttacttttgg gaggggaacc agtaggttga ggacaggaga gggaagggtc ttaacactta
3901 cacccttttg tacattttga attttgaacc atgtgactgt attacctatt caaaataaac
3961 aataaatggg cccaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//