LOCUS BC050529 4415 bp mRNA linear HUM 19-OCT-2006
DEFINITION Homo sapiens ankyrin repeat domain 27 (VPS9 domain), mRNA (cDNA
clone MGC:57556 IMAGE:6067580), complete cds.
ACCESSION BC050529
VERSION BC050529.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4415)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4415)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: l Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14149802.
FEATURES Location/Qualifiers
source 1..4415
/db_xref="H-InvDB:HIT000053477"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57556 IMAGE:6067580"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4415
/gene="ANKRD27"
/gene_synonym="DKFZP434L0718"
/gene_synonym="FLJ00040"
/gene_synonym="VARP"
/db_xref="GeneID:84079"
/db_xref="HGNC:HGNC:25310"
CDS 113..3265
/gene="ANKRD27"
/gene_synonym="DKFZP434L0718"
/gene_synonym="FLJ00040"
/gene_synonym="VARP"
/codon_start=1
/product="ankyrin repeat domain 27 (VPS9 domain)"
/protein_id="AAH50529.1"
/db_xref="GeneID:84079"
/db_xref="HGNC:HGNC:25310"
/translation="MALYDEDLLKNPFYLALQKCRPDLCSKVAQIHGIVLVPCKGSLS
SSIQSTCQFESYILIPVEEHFQTLNGKDVFIQGNRIKLGAGFACLLSVPILFEETFYN
EKEESFSILCIAHPLEKRESSEEPLAPSDPFSLKTIEDVREFLGRHSERFDRNIASFH
RTFRECERKSLRHHIDSANALYTKCLQQLLRDSHLKMLAKQEAQMNLMKQAVEIYVHH
EIYNLIFKYVGTMEASEDAAFNKITRSLQDLQQKDIGVKPEFSFNIPRAKRELAQLNK
CTSPQQKLVCLRKVVQLITQSPSQRVNLETMCADDLLSVLLYLLVKTEIPNWMANLSY
IKNFRFSSLAKDELGYCLTSFEAAIEYIRQGSLSAKPPESEGFGDRLFLKQRMSLLSQ
MTSSPTDCLFKHIASGNQKEVERLLSQEDHDKDTVQKMCHPLCFCDDCEKLVSGRLND
PSVVTPFSRDDRGHTPLHVAAVCGQASLIDLLVSKGAMVNATDYHGATPLHLACQKGY
QSVTLLLLHYKASAEVQDNNGNTPLHLACTYGHEDCVKALVYYDVESCRLDIGNEKGD
TPLHIAARWGYQGVIETLLQNGASTEIQNRLKETPLKCALNSKILSVMEAYHLSFERR
QKSSEAPVQSPQRSVDSISQESSTSSFSSMSASSRQEETKKDYREVEKLLRAVADGDL
EMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT
SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD
SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV
FVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLDDVAETDRKEY
VTVKIRKKWNSKLYDLPDEPFTRQFYFVHSAGQFKGKTSREIMARDRSVPNLTEGSLH
EPGRQSVTLRQNNLPAQSGSHAAEKGNSDWPERPGLTQTGPGHRRMLRRHTVEDAVVS
QGPEAAGPLSTPQEVSASRS"
BASE COUNT 1201 a 1065 c 1090 g 1059 t
ORIGIN
1 ggcatcgagg tcccagcagc ggacgaggga ggtgccgccg tcgcccagga tgggctggga
61 atgaagcgat gtagcctttt aagagatttg ctctgaccca tctgaagtcc atatggctct
121 gtatgatgaa gacctcctga aaaatccttt ctatctggct ctgcaaaagt gccgccctga
181 cttgtgcagc aaagtggccc aaatccatgg cattgtctta gtaccctgca aaggaagcct
241 gtcgagcagc atccagtcta cttgtcagtt tgagtcctac attttgatac ctgtggaaga
301 gcattttcag accttaaatg gaaaggatgt ctttattcaa gggaacagga ttaaattagg
361 agctggtttt gcctgtcttc tctcagtgcc cattctcttt gaagaaactt tctacaatga
421 aaaagaagag agtttcagca tcctgtgtat agcccatcct ttggaaaaga gagagagttc
481 agaagagcct ttggcaccct cagatccctt ttccctgaaa accattgaag atgtgagaga
541 gttcttggga agacactccg agcgatttga caggaacatc gcctctttcc atcgaacatt
601 ccgagaatgc gagagaaaga gcctccgtca ccacatagac tcagcgaatg ctctctacac
661 caaatgcctc cagcagcttc tgagggactc tcacctgaaa atgctcgcca agcaggaggc
721 ccagatgaac ctgatgaagc aggcagtgga gatatacgtc catcatgaaa tttacaacct
781 gatctttaaa tacgtgggga ccatggaggc aagtgaggat gcggccttta acaaaatcac
841 aagaagcctt caagatcttc agcagaaaga tattggtgtg aaaccggagt tcagctttaa
901 catacctcgt gccaaaagag agctggctca gctgaacaaa tgcacctccc cacagcagaa
961 gcttgtctgc ttgcgaaaag tggtgcagct cattacacag tctccaagcc agagagtgaa
1021 cctggagacc atgtgtgctg atgatctgct atcagtcctg ttatacttgc ttgtgaaaac
1081 ggagatccct aattggatgg caaatttgag ttacatcaaa aacttcaggt ttagcagctt
1141 ggcaaaggat gaactgggat actgcctgac ctcattcgaa gctgccattg aatatattcg
1201 gcaaggaagc ctctctgcta aaccccctga gtctgaggga tttggagaca ggctgttcct
1261 taagcagaga atgagcttac tctctcagat gacttcgtct cccaccgact gcctgtttaa
1321 gcacattgca tcaggtaacc agaaagaagt ggagagactt ctgagccaag aggaccatga
1381 taaagatacc gtccaaaaga tgtgtcaccc tctctgcttc tgcgatgact gtgagaaact
1441 cgtctctggg aggttgaatg atccctcagt tgtcactcca ttctccagag acgacagggg
1501 gcacacccct ctccatgtgg ctgctgtctg tgggcaggca tccctcatcg acctcctggt
1561 ttccaagggc gccatggtaa atgccacaga ctaccatgga gccactccgc tccacctggc
1621 ctgtcagaag ggctaccaga gcgtgacgct gctgctgctg cactacaagg ccagcgcgga
1681 agtgcaggac aacaatggga atacgccact ccacctggcc tgcacctacg gccacgagga
1741 ctgtgtgaag gctctggttt actacgacgt ggagtcgtgc agacttgaca ttggcaatga
1801 gaaaggagac acccctctac acattgctgc ccgctggggc taccaaggcg tcatagagac
1861 attgctgcag aacggagcgt ccaccgagat ccagaacaga ctgaaggaga cgcccctcaa
1921 gtgtgcatta aactcaaaga ttctgtctgt aatggaagcc tatcacctgt ccttcgagag
1981 gaggcagaag tcgtccgagg cccctgtgca gtccccgcag cgctccgtgg actccatcag
2041 ccaagagtcc tccacttcca gcttctcctc catgtcagcc agctcaaggc aggaggagac
2101 caagaaggac tacagagagg tagaaaaact tttgagagca gttgctgatg gagatctaga
2161 aatggtgcgt tacctgttgg aatggacaga ggaggacctg gaggatgcgg aggacactgt
2221 cagtgcagcg gaccccgaat tctgtcaccc gttgtgccag tgccccaagt gtgccccagc
2281 tcagaagagg ctggcgaagg ttcctgccag tgggcttggt gtgaacgtga ccagccagga
2341 cggctcctcc ccgctgcatg tcgccgccct gcacggccgg gcggacctca tccccctcct
2401 gctgaagcac ggggccaacg caggtgccag gaacgcagac caagccgtcc cgctccacct
2461 ggcctgccag cagggccact ttcaggtggt gaagtgtctg ttagattcga atgcaaaacc
2521 caataagaag gacctcagtg gaaacacgcc cctcatttac gcctgctccg gtggccatca
2581 cgagcttgtg gcactgctgc tacagcacgg ggcctccatt aacgcttcta acaataaggg
2641 caacacagcg ctgcacgagg ctgtgattga aaagcacgtc ttcgtggtag agctgcttct
2701 gctccacgga gcgtcagttc aggtgctgaa caagcggcag cgcacggctg tagactgtgc
2761 tgaacagaat tcaaaaataa tggaattgct tcaggtggta ccaagctgtg ttgcttcatt
2821 agatgatgtg gctgaaactg accgcaagga gtatgtcact gttaagatca ggaaaaaatg
2881 gaactcaaaa ctgtatgatc taccagatga gccttttaca agacagtttt actttgtcca
2941 ctcagctggt cagtttaagg gaaagacttc aagggagatt atggcaagag atagaagtgt
3001 ccctaattta accgaaggtt ctttgcatga gccagggagg caaagtgtca cactgagaca
3061 gaataacctg ccagctcaga gtggatctca tgctgctgag aaaggcaaca gcgactggcc
3121 agagaggcct ggactgacac agactggccc tggacacaga cggatgctgc ggagacacac
3181 ggtagaggat gcggtcgtgt cccagggccc ggaggctgct ggccccctct ccactcccca
3241 agaggttagt gcttcccggt cctaacagga atgaggagtt gttgaaccca ctgctaggaa
3301 gcaaggatgc aacaagatga tgctgagcgt gaacacatct gagaactaaa tgtgcttcca
3361 tgagactggc ttgagaagtc ttcagcacca agttcctgaa agcttttctg tggcaggaaa
3421 gaatgcaaca aaaaagttaa ccaccaccat ctctctcctc ttcaaagcta atgaatacaa
3481 ttgaaacaga caaaaattcc agtagcatcc agatccttaa gccagaggtg catgcttctt
3541 tttaagtatg agggtttgtt ggtcacagtg ggagaggttt caccaccgca ttctgacctc
3601 ctcctcccaa aaggtgctaa acctctctga cctgtgtaca ttcacaaacc acagctagaa
3661 ttcctccacc taggattaag ctggagagaa gtaagtaatt taggtttcat ggtactgtag
3721 aggccaggct gaaatgtcat atctgaagga agaaagcagc agctggacaa tgtttctttg
3781 caaagcaaca ctcgaaccaa aagatgcctc aatcccattt tgatattcat tttagtgaaa
3841 ggatgcatca gacctgttcc acatcatgca catgggaaag ggtggttatc attttccttc
3901 taacaagtag gtacagatat tcggttacta cacgtgcacc tgtagcagtg tttctagaaa
3961 catccctttt tgttgagaac ctcccttgaa tgtctgtcac actcacacct gacgggatgg
4021 ttactggatt agagagtaga tttggcacat cttttcttag tcttttgatt caaattcaaa
4081 acttaacagc acaaaccagg tcagagttac tttcggttag aatttattgc catttattcc
4141 tttttataaa tttctataga ttatactgtt atttttatgt tattggcaga gctacacgta
4201 tatgggtttg tcctgagtcc gttttcaaat gaccttgtga ttgataggga aatggttttg
4261 tccatgttct tggaaatact tgtgtatgta cagaagggag ggattatttt tctacaaagt
4321 aatttatgat ttctaatttt ctaatgtgcc ttggatatgt gccaaatgat ggaaaagaaa
4381 cagtaaactt tatgattctt aaaaaaaaaa aaaaa
//