LOCUS BC050527 3654 bp mRNA linear HUM 16-DEC-2006
DEFINITION Homo sapiens NLR family, CARD domain containing 5, mRNA (cDNA clone
IMAGE:5589287), partial cds.
ACCESSION BC050527
VERSION BC050527.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3654)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3654)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: g Column: 24.
FEATURES Location/Qualifiers
source 1..3654
/db_xref="H-InvDB:HIT000259136"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5589287"
/tissue_type="Ovary, pooled from 3 adults"
/clone_lib="NIH_MGC_125"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3654
/gene="NLRC5"
/gene_synonym="CLR16.1"
/gene_synonym="FLJ21709"
/gene_synonym="NOD27"
/db_xref="GeneID:84166"
/db_xref="HGNC:HGNC:29933"
CDS <1..1163
/gene="NLRC5"
/gene_synonym="CLR16.1"
/gene_synonym="FLJ21709"
/gene_synonym="NOD27"
/codon_start=3
/product="NLRC5 protein"
/protein_id="AAH50527.1"
/db_xref="GeneID:84166"
/db_xref="HGNC:HGNC:29933"
/translation="ELPLSSRRMRLTHCGLQEKHLEQLCKALGGSCHLGHLHLDFSGN
ALGDEGAARLAQLLPGLGALQSLNLSENGLSLDAVLGLVRCFSTLQWLFRLDISFESQ
HILLRGDKTSRDMWATGSLPDFPAAAKFLGFRQRCIPRSLCLSECPLEPPSLTRLCAT
LKDCPGPLELQLSCEFLSDQSLETLLDCLPQLPQLSLLQLSQTGLSPKSPFLLANTLS
LCPRVKKVDLRSLHHATLHFRSNEEEEGVCCGLSANLLGDSGLRCLLECLPQVPISGL
LDLSHNSISQESALYLLETLPSCPRVREASVNLGSEQSFRIHFSREDQAGKTLRLSEC
SFRPEHVSRLATGLSKSLQLTELTLTQCCLGQKQLAILLSLVGRPAGLFSLS"
BASE COUNT 811 a 1032 c 1031 g 780 t
ORIGIN
1 ctgagctgcc tctgagctcc cgaaggatga ggctgacaca ttgtggcctc caagaaaagc
61 acctagagca gctctgcaag gctctgggag gaagctgcca cctcggtcac ctccacctcg
121 acttctcagg caatgctctg ggggatgaag gtgcagcccg gctggctcag ctgctcccag
181 ggctgggagc tctgcagtcc ttgaacctca gtgagaacgg tttgtccctg gatgccgtgt
241 tgggtttggt tcggtgcttc tccactctgc agtggctctt ccgcttggac atcagctttg
301 aaagccaaca catcctcctg agaggggaca agacaagcag ggatatgtgg gccactggat
361 ctttgccaga cttcccagct gcagccaagt tcttagggtt ccgtcagcgc tgcatcccca
421 ggagcctctg cctcagtgag tgtcctctgg agcccccaag cctcacccgc ctctgtgcca
481 ctctgaagga ctgcccggga cccctggaac tgcaattgtc ctgtgagttt ctgagtgacc
541 agagcctgga gactctactg gactgcttac ctcaactccc tcagctgagc ctgctgcagc
601 tgagccagac gggactgtcc ccgaaaagcc ccttcctgct ggccaacacc ttaagcctgt
661 gtccacgggt taaaaaggtg gatctcaggt ccctgcacca tgcaactttg cacttcagat
721 ccaacgagga ggaggaaggc gtgtgctgtg gtctctcagc aaacctgctg ggcgacagcg
781 gactcagatg ccttctggaa tgtctgccgc aggtgcccat ctccggtttg cttgatctga
841 gtcacaacag catttctcag gaaagtgccc tgtacctgct ggagacactg ccctcctgcc
901 cacgtgtccg ggaggcctca gtgaacctgg gctctgagca gagcttccgg attcacttct
961 ccagagagga ccaggctggg aagacactca ggctaagtga gtgcagcttc cggccagagc
1021 acgtgtccag gctggccacc ggcttgagca agtccctgca gctgacggag ctcacgctga
1081 cccagtgctg cctgggccag aagcagctgg ccatcctcct gagcttggtg gggcgacccg
1141 cagggctgtt cagcctcagc tgaagcggtt tcaaggtgca ggagccgtgg gcggacagag
1201 ccagggttct ctccctgtta gaagtctgcg cccaggcctc aggcagtgtc actgaaatca
1261 gcatctccga gacccagcag cagctctgtg tccagctgga atttcctcgc caggaagaga
1321 atccagaagc tgtggcactc aggttggctc actgtgacct tggagcccac cacagccttc
1381 ttgtcgggca gctgatggag acatgtgcca ggctgcagca gctcagcttg tctcaggtta
1441 acctctgtga ggacgatgat gccagttccc tgctgctgca gagcctcctg ctgtccctct
1501 ctgagctgaa gacatttcgg ctgacctcca gctgtgtgag caccgagggc ctcgcccacc
1561 tggcatctgg tctgggccac tgccaccact tggaggagct ggacttgtct aacaatcaat
1621 ttgatgagga gggcaccaag gcgctgatga gggcccttga ggggaaatgg atgctaaaga
1681 ggctggacct cagtcacctt ctgctgaaca gctccacctt ggccttgctt actcacagac
1741 taagccagat gacctgcctg cagagcctca gactgaacag gaacagtatc ggtgatgtcg
1801 gttgctgcca cctttctgag gctctcaggg ctgccaccag cctagaggag ctggacttga
1861 gccacaacca gattggagac gctggtgtcc agcacttagc taccatcctg cctgggctgc
1921 cagagctcag gaagatagac ctctcaggga atagcatcag ctcagccggg ggagtgcagt
1981 tggcagagtc tctcgttctt tgcaggcgcc tggaggagtt gatgcttggc tgcaatgccc
2041 tgggggatcc cacagccctg gggctggctc aggagctgcc ccagcacctg agggtcctac
2101 acctaccatt cagccatctg ggcccaggtg gggccctgag cctggcccag gccctggatg
2161 gatcccccca tttggaagag atcagcttgg cggaaaacaa cctggctgga ggggtcctgc
2221 gtttctgtat ggagctcccg ctgctcagac agatagacct ggtttcctgt aagattgaca
2281 accagactgc caagctcctc acctccagct tcacgagctg ccctgccctg gaagtaatct
2341 tgctgtcctg gaatctcctc ggggatgagg cagctgccga gctggcccag gtgctgccgc
2401 agatgggccg gctgaagaga gtggacctgg agaagaatca gatcacagct ttgggggcct
2461 ggctcctggc tgaaggactg gcccaggggt ctagcatcca agtcatccgc ctctggaata
2521 accccattcc ctgcgacatg gcccagcacc tgaagagcca ggagcccagg ctggactttg
2581 ccttctttga caaccagccc caggcccctt ggggtacttg atggccccct caagacctct
2641 ggaatccagc caagtgatgc acccaaatga tccacctttc gcccactggg ataaatgact
2701 caggaaagaa gagcctcggc agggcgctct gcactccacc caggaggaag gatacgtgtg
2761 tcctgctgca gtcctcaggg agaacttttt tgggaaccag gagctgggtc tggacaaagg
2821 agtaccctgc attacgtggg atatgtgtga tcaattgggg acatgcgaca cacaatgagg
2881 gtgtcatgac aatgcatgac acgtacggtt atatgtggca gtgtgacccc ttgacatgtg
2941 gcgttacatg aaagtcagtg tggcacgtgt tctgtggcat gggtgctggc atcccaagtg
3001 gcaggataca tgattgttgg tctatatatg acacatgaca aatgtccatg tcacaggact
3061 catggctggc cagatgacct caggctggcc caagatctaa tttattaatt tttaaagcaa
3121 atacatattt atagattgtg tgtatggagc agctaagtca ggaaaagtct tccgcccgag
3181 ctgggagggg agagtgtcca tgcactgacc agtccagggg ctcaagggcc agggctctgg
3241 aacaagccag ggactcagcc attaagtccc ctcctgcctc aatcctcagc ctacccatct
3301 ataaacttga tgactcctcc cttacttaca tactagcttc caaggacagg tggaggtagg
3361 gccagcctgg cgggagtgga gaagcccagt ctgtcctatg taagggacaa agccaggtct
3421 aatggtactg ggtagggggc actgccaaga caataagcta ggctactggg tccagctact
3481 actttggtgg gattcaggtg agtctccatg cacttcacat gttacccagt gttcttgtta
3541 cttccaagga gaaccaagaa tggctctgtc acactcgaag ccaggtttga tcaataaaca
3601 caatggtatt ccacgtcaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//