LOCUS BC050445 3823 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens soc-2 suppressor of clear homolog (C. elegans), mRNA
(cDNA clone MGC:54207 IMAGE:6067669), complete cds.
ACCESSION BC050445
VERSION BC050445.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3823)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3823)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: k Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281397.
FEATURES Location/Qualifiers
source 1..3823
/db_xref="H-InvDB:HIT000053460"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54207 IMAGE:6067669"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3823
/gene="SHOC2"
/gene_synonym="KIAA0862"
/gene_synonym="SIAA0862"
/gene_synonym="SOC-2"
/gene_synonym="SOC2"
/gene_synonym="SUR-8"
/gene_synonym="SUR8"
/db_xref="GeneID:8036"
/db_xref="HGNC:HGNC:15454"
/db_xref="MIM:602775"
CDS 205..1953
/gene="SHOC2"
/gene_synonym="KIAA0862"
/gene_synonym="SIAA0862"
/gene_synonym="SOC-2"
/gene_synonym="SOC2"
/gene_synonym="SUR-8"
/gene_synonym="SUR8"
/codon_start=1
/product="soc-2 suppressor of clear homolog (C. elegans)"
/protein_id="AAH50445.1"
/db_xref="GeneID:8036"
/db_xref="HGNC:HGNC:15454"
/db_xref="MIM:602775"
/translation="MSSSLGKEKDSKEKDPKVPSAKEREKEAKASGGFGKESKEKEPK
TKGKDAKDGKKDSSAAQPGVAFSVDNTIKRPNPAPGTRKKSSNAEVIKELNKCREENS
MRLDLSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTS
LPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLS
MLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDL
PDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLN
SLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLT
SLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKL
RELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTH
LPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPS
FIIQFLKMQGPYRAMV"
BASE COUNT 1204 a 669 c 704 g 1246 t
ORIGIN
1 ctattttacc agttggaatg aatgatcaga aatgggcata gtgcttttag atccaacatg
61 taacagatgg atgttactcc atgctgatta cttcttcaag ccagtacttt tttgattgtg
121 taggatcttt gtctcttcat ctttgaattc aattactgga aaataaaagg agttcatgta
181 gtttttgtcc aggcttgagt caccatgagt agtagtttag gaaaagaaaa agactctaaa
241 gaaaaagatc ccaaagtacc atcagccaag gaaagagaaa aggaggcaaa agcctctgga
301 ggttttggga aagagagcaa agaaaaagaa cctaagacca aagggaaaga tgccaaagat
361 ggaaagaagg actccagtgc tgcccaacca ggggtggcat tttcagttga caatacgatc
421 aaacggccaa acccagcacc tgggactaga aaaaaatcca gcaatgcaga ggtgattaaa
481 gagctcaaca aatgccggga agagaattca atgcgtttgg acttatccaa gagatctata
541 cacatattgc catcatcaat caaagagttg actcaattaa cagaacttta tttatacagt
601 aacaaattgc agtccctccc agcagaggtg ggatgtttag taaatctcat gacactggct
661 ctaagtgaaa attcacttac cagtttgcct gactctcttg ataacttgaa gaagctgcgg
721 atgcttgatt tacggcataa taaactgaga gaaattcctt cagtggtgta taggctggat
781 tctctcacca ctctttacct tcgctttaat cgtataacta ctgtggaaaa ggacatcaaa
841 aacttgtcaa aactcagcat gcttagcatt cgagagaaca aaattaaaca actacctgct
901 gaaattggtg aattatgtaa cctcattacg ctggatgtag ctcacaatca acttgaacac
961 cttccaaagg agattggaaa ctgtacacag ataaccaacc ttgacttgca gcacaatgaa
1021 ctgctagacc tcccagatac tataggaaac ctgtccagtt taagtcgtct tggtctgaga
1081 tataacagac tgtcagcaat acccagatca ttagcaaaat gcagtgcact tgaagaatta
1141 aatttagaga acaataacat ttctacttta ccagagagtc ttttatcaag tcttgtgaaa
1201 ctgaatagtt tgaccttagc tagaaattgc ttccagttgt atccagtggg tggtccatct
1261 cagttttcta ccatctattc cctcaacatg gaacacaatc gaatcaacaa aattccattt
1321 ggaattttct ccagagcaaa agtattaagt aagctgaata tgaaggacaa tcagttaaca
1381 tcacttccct tggattttgg aacttggacc agtatggtag aattgaattt agccactaat
1441 cagctcacaa agatccctga ggatgtgtct ggtctcgttt ctcttgaggt tcttatctta
1501 tcaaacaatc ttctaaagaa gcttccccat ggtcttggaa accttaggaa gttaagagag
1561 ttggatctag aagagaacaa attggaatcc ttgccaaatg aaattgcata tcttaaggat
1621 ttacagaaat tagtcttgac aaacaaccag ttgaccactc ttcccagagg cattggtcac
1681 cttactaatc tcacacatct gggccttgga gagaacctac ttactcacct tcctgaagaa
1741 attggtacac tggagaacct agaagaactg tatttgaatg acaaccccaa cctgcatagc
1801 cttccctttg agctggcact ctgcagcaag ctttcaatca tgagtattga gaactgtcca
1861 ctcagtcacc ttccacctca gattgttgct ggggggcctt ctttcatcat tcagttctta
1921 aagatgcagg gtccatatcg tgccatggtc tgatataaat ctgctggtcc cacacactgt
1981 tcaaaaatag actgccatta atgtttctta tctatatctg tatctattta tgtagatatt
2041 ggtatatggc agatttataa aaattgcatt atgtgtttct gctaatagag gaatcatagc
2101 catttagaat tttttttaaa ttctgtacaa aaggcttata taagttttct ttgctgaatt
2161 tgatggatgt ttttctgttg tgtaatctga tatgccagtt tgcttaaaac atttgccaac
2221 acattatgaa gttattaaat ttaagggaca gaggtagtat agttagatat actttctctt
2281 aggaaaaata atgggcaaaa atttttgttg caacttttca tatatatttt ccccttacca
2341 attgttttat ccttatagta ttgtaggccc tgaaagtaga atttttcttt aacttatttt
2401 gagatttgag atttaaattt tatgtattgt ttacagtcag agtaaatcac tggatttctt
2461 ttgtttgttt tgatttgctc tgttttattc agtcaaatct agagtttgaa tcctctgcta
2521 aagaatttgc atccactggt gtaaacagtg aaaggtattt gcttgttgaa aaaaaaaact
2581 ggcaaagtga aaagatacag tcaaaaatct agaatttctt taattttgct tctctgacga
2641 gttgtgaagc aaaatacctg aagtgagtct ttgggtaggg gaagggtatt gagacctttt
2701 ctagtatgaa tattttttaa gtttggggga agagaaactt gcagtgaaaa ggagtttttt
2761 cattcctgaa agttgcagat ccacaaaact aacaggataa ttgggcaaat aaattacata
2821 taaacacaca caatctatat atgtatatac aatgctatat agatatgtat ttattatatc
2881 ataaactaca gtaggtaact ttaaggattt cttcctatcc ttgtacaatg acatgaatgt
2941 ctttctttga aaactgcaat gtatgtatgt ttcaaggtta tttaacagtg tactatggtt
3001 ttatatcttg acttgccttg tacatctttc aattctggaa tatctgtgtc taagcacaat
3061 atcttcacac tgtgctgtat tgctgctgaa ctaaatgcac ttttccccac atatggggca
3121 ctggcttcaa acaattcagt tcagtatcat tacttttaat ctcatctttc ctttcttggt
3181 agttgttaat acagttatgg aaaagaggca cattgcatag aagccattgg ggagttcagt
3241 ggaagttctg taagatgtgc atgtactatt tgatgcgttt tctttgcttc actgctttta
3301 atacttagca gtattgttgg tctaagtcaa tttgattatt gaggagtctc agagcaaggt
3361 gcgttctaga tgtcatccta aaaaacactt catatataat taatcactat tttgtataat
3421 tacatattgc tgcttgtgtg tttttttttt ttttccattt agttgggcgt tgtgttttac
3481 acaaaaccat ttttgaatta aggctatgat attaagatag aaatttggac tgttgttctg
3541 cttttcctgg cactcaaatt catgactagt tttgaggtca aacctatgtt cgtaatgaga
3601 gattttataa ggatcaacta agaaatggaa ggcaggtgaa gatataaaac cctagaatgc
3661 ttaaatgtgc tgtaaaacta ttgtagatgt cactggattt taccaagtaa tatcctttct
3721 tttttttttc cccccatctg ctgtggcttt tcagttaaaa ttttgtttat aaaaggaatt
3781 tgtttattac agctctacct aaaaaaaaaa aaaaaaaaaa aaa
//