LOCUS BC050442 1685 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens homeobox C4, mRNA (cDNA clone MGC:54198
IMAGE:6186995), complete cds.
ACCESSION BC050442
VERSION BC050442.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1685)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1685)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: l Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497539.
FEATURES Location/Qualifiers
source 1..1685
/db_xref="H-InvDB:HIT000053458"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54198 IMAGE:6186995"
/tissue_type="Peripheral Nervous System, sympathetic
trunk"
/clone_lib="Lupski_sympathetic_trunk"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1685
/gene="HOXC4"
/gene_synonym="cp19"
/db_xref="GeneID:3221"
/db_xref="HGNC:HGNC:5126"
/db_xref="MIM:142974"
CDS 47..841
/gene="HOXC4"
/gene_synonym="cp19"
/codon_start=1
/product="homeobox C4"
/protein_id="AAH50442.1"
/db_xref="GeneID:3221"
/db_xref="HGNC:HGNC:5126"
/db_xref="MIM:142974"
/translation="MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESG
FQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAP
LSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPSYNGGEPKRSR
TAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLP
NTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL"
BASE COUNT 485 a 457 c 365 g 378 t
ORIGIN
1 agaaaaacga caaagcgaga aaaattattt tccactccag aaattaatga tcatgagctc
61 gtatttgatg gactctaact acatcgatcc gaaatttcct ccatgcgaag aatattcgca
121 aaatagctac atccctgaac acagtccgga atattacggc cggaccaggg aatcgggatt
181 ccagcatcac caccaggagc tgtacccacc accgcctccg cgccctagct accctgagcg
241 ccagtatagc tgcaccagtc tccaggggcc cggcaattcg cgaggccacg ggccggccca
301 ggcgggccac caccaccccg agaaatcaca gtcgctctgc gagccggcgc ctctctcagg
361 cgcctccgcc tccccgtccc cagccccgcc agcctgcagc cagccagccc ccgaccatcc
421 ctccagcgcc gccagcaagc aacccatagt ctacccatgg atgaaaaaaa ttcacgttag
481 cacggtgaac cccagttata acggagggga acccaagcgc tcgaggacag cctatacccg
541 gcagcaagtc ctggaattag agaaagagtt tcattacaac cgctacctga cccgaaggag
601 aaggatcgag atcgcccact cgctgtgcct ctctgagagg cagatcaaaa tctggttcca
661 aaaccgtcgc atgaaatgga agaaggacca ccgactcccc aacaccaaag tcaggtcagc
721 acccccggcc ggcgctgcgc ccagcaccct ttcggcagct accccgggta cttctgaaga
781 ccactcccag agcgccacgc cgccggagca gcaacgggca gaggacatta ccaggttata
841 aaacataact cacacccctg cccccacccc atgcccccac cctcccctca cacacaaatt
901 gactcttatt tatagaattt aatatatata tatatatata tatataggtt cttttctctc
961 ttcctctcac cttgtccctt gtcagttcca aacagacaaa acagataaac aaacaagccc
1021 cctgccctcc tctccctccc actgttaagg acccttttaa gcatgtgatg ttgtcttagc
1081 atggtacctg ctgggtgttt ttttttaaaa ggccattttg gggggttatt tattttttaa
1141 gaaaaaaagc tgcaaaaatt atatattgca aggtgtgatg gtctggcttg ggtgaatttc
1201 aggggaaatg aggaaaagaa aaaaggaaag aaattttaaa gccaattctc atccttctcc
1261 tcctcctcct tcccgcctct ttccttaggc cttttgcatt gaaaatgcac caggggaggt
1321 tagtgagggg gaagtcattt taaggagaac aaagctatga agttcttttg tattattgtt
1381 ggggggggtg tgggaggaga gggggcgaag acagcagaca aagctaaatg catctggaga
1441 gcctctcaga gctgttcagt ttgaggagcc aaaagaaaat caaaatgaac tttcagttca
1501 gagaggcagt ctataggtag aatctctccc cacccctatc gtggttattg tgtttttgga
1561 ctgaatttac ttgattattg taaaacttgc aataaagaat tttagtgtcg atgtgaaatg
1621 ccccgtgatc aataataaac cagtggatgt gaattagttt taaaaaaaaa aaaaaaaaaa
1681 aaaaa
//