LOCUS BC050439 1779 bp mRNA linear HUM 18-JAN-2007
DEFINITION Homo sapiens vacuolar protein sorting 36 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:54186 IMAGE:5764280), complete cds.
ACCESSION BC050439
VERSION BC050439.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1779)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1779)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: g Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 71051597.
FEATURES Location/Qualifiers
source 1..1779
/db_xref="H-InvDB:HIT000053456"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54186 IMAGE:5764280"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1779
/gene="VPS36"
/gene_synonym="CGI-145"
/gene_synonym="EAP45"
/db_xref="GeneID:51028"
/db_xref="HGNC:HGNC:20312"
CDS 8..1168
/gene="VPS36"
/gene_synonym="CGI-145"
/gene_synonym="EAP45"
/codon_start=1
/product="vacuolar protein sorting 36 homolog (S.
cerevisiae)"
/protein_id="AAH50439.1"
/db_xref="GeneID:51028"
/db_xref="HGNC:HGNC:20312"
/translation="MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLST
HRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSK
NSYIKLSFKEHGQIEFYRRLSEEMTQRRWENMPVSQSLQTNRGPQPGRIRAVGIVGIE
RKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFK
SYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRA
RGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEK
GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFYPNLFMTQS"
BASE COUNT 644 a 320 c 386 g 429 t
ORIGIN
1 agcggccatg gaccgcttcg tttggaccag cggcctcctg gagatcaacg agaccctggt
61 gatccagcag cgcggggtgc gaatctacga tggcgaggag aagataaaat ttgatgctgg
121 gactctcctt cttagtacac accgactgat ttggagagat cagaaaaatc atgagtgttg
181 catggccatt ctcctttccc aaattgtgtt cattgaagaa caggcggctg gaattgggaa
241 gagtgccaaa atagtggttc atcttcaccc agctcctcct aacaaagaac ctggcccatt
301 ccagagtagt aagaactcct acatcaaact ctccttcaaa gaacatggcc agattgagtt
361 ttacaggcgt ttatcagagg aaatgacaca aagaagatgg gagaatatgc cagtttccca
421 gtcattacaa acaaatagag gaccccagcc aggaagaata agggctgtag gaattgtagg
481 tattgaaagg aaactggaag aaaaaagaaa agaaactgac aaaaacattt ctgaggcctt
541 tgaagacctc agcaaactaa tgatcaaggc taaggaaatg gtggaattat caaaatcaat
601 tgctaataaa attaaagaca aacaaggtga catcacagaa gatgagacca tcaggtttaa
661 atcctacttg ctgagcatgg gaatagctaa cccagttacc agagaaacct acggctcagg
721 cacacagtac cacatgcagc tggccaaaca actggctgga atattgcagg tgcctttaga
781 ggaacgaggg ggaataatgt cactcacgga ggtgtactgc ttagtaaacc gagctcgagg
841 aatggaattg ctctcaccag aagatttagt gaatgcgtgc aagatgctgg aagcactgaa
901 attacctctc aggctccgtg tgtttgacag tggcgtcatg gtaattgagc ttcagtctca
961 caaggaagag gaaatggtgg cctcggccct ggagacagtt tcagaaaagg gatccctaac
1021 atcagaagag tttgctaagc ttgtgggaat gtctgtcctc ctagccaaag aaaggttgct
1081 gcttgcagag aagatgggcc atctttgccg tgatgactca gtggaaggcc tgcgttttta
1141 cccaaattta tttatgacac agagctaagg gttttgtatt taaaatcctt tttgtccata
1201 tgcttgcgtc atgtagaggt tgtatgacat tgagctaaga gataaacccc gatcaattga
1261 gaatttatta gaacttcaca gtgcaatgta aatctctttt aatttctcac taaatatggt
1321 ccaggaaatt tatttagtat acgcatagga aaattcagaa aagtgaatgc caatatgaat
1381 ttaaaatcat gctatagtgc agaaccctca gagtttaact tggaatatag tggattttaa
1441 cttgatcctc aaatctaatc attttataaa gaagggaatt tagttttgca gagaataaaa
1501 agagaagttg catgttcaga caggttagat tattattttg gtgtaactga aattcactga
1561 ttgcacatga caatgttggg acaaaatata ctgcagcatg ctatatgagg ctcctcccca
1621 gggcctttag aagcagtcat agacatgtct tcaacatacc aaataaaata cctttaaaaa
1681 tgaaataaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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