LOCUS BC050415 2369 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens retinoic acid receptor, beta, mRNA (cDNA clone
IMAGE:6473008), partial cds.
ACCESSION BC050415
VERSION BC050415.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2369)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2369)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC050415.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: p Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14916495.
FEATURES Location/Qualifiers
source 1..2369
/db_xref="H-InvDB:HIT000099191"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6473008"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2369
/gene="RARB"
/gene_synonym="HAP"
/gene_synonym="NR1B2"
/gene_synonym="RRB2"
/db_xref="GeneID:5915"
/db_xref="HGNC:HGNC:9865"
/db_xref="MIM:180220"
CDS <1..1042
/gene="RARB"
/gene_synonym="HAP"
/gene_synonym="NR1B2"
/gene_synonym="RRB2"
/codon_start=2
/product="RARB protein"
/protein_id="AAH50415.2"
/db_xref="GeneID:5915"
/db_xref="HGNC:HGNC:9865"
/db_xref="MIM:180220"
/translation="GFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGM
SKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTN
SSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETG
LLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR
SISAKGTERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSV
ENSGVSQSPLVQ"
BASE COUNT 742 a 490 c 445 g 692 t
ORIGIN
1 gggctttttc cgcagaagta ttcagaagaa tatgatttac acttgtcacc gagataagaa
61 ctgtgttatt aataaagtca ccaggaatcg atgccaatac tgtcgactcc agaagtgctt
121 tgaagtggga atgtccaaag aatctgtcag gaatgacagg aacaagaaaa agaaggagac
181 ttcgaagcaa gaatgcacag agagctatga aatgacagct gagttggacg atctcacaga
241 gaagatccga aaagctcacc aggaaacttt cccttcactc tgccagctgg gtaaatacac
301 cacgaattcc agtgctgacc atcgagtccg actggacctg ggcctctggg acaaattcag
361 tgaactggcc accaagtgca ttattaagat cgtggagttt gctaaacgtc tgcctggttt
421 cactggcttg accatcgcag accaaattac cctgctgaag gccgcctgcc tggacatcct
481 gattcttaga atttgcacca ggtatacccc agaacaagac accatgactt tctcagacgg
541 ccttacccta aatcgaactc agatgcacaa tgctggattt ggtcctctga ctgaccttgt
601 gttcaccttt gccaaccagc tcctgccttt ggaaatggat gacacagaaa caggccttct
661 cagtgccatc tgcttaatct gtggagaccg ccaggacctt gaggaaccga caaaagtaga
721 taagctacaa gaaccattgc tggaagcact aaaaatttat atcagaaaaa gacgacccag
781 caagcctcac atgtttccaa agatcttaat gaaaatcaca gatctccgta gcatcagtgc
841 taaaggtaca gagcgtgtaa ttaccttgaa aatggaaatt cctggatcaa tgccacctct
901 cattcaagaa atgctggaga attctgaagg acatgaaccc ttgaccccaa gttcaagtgg
961 gaacacagca gagcacagtc ctagcatctc acccagctca gtggaaaaca gtggggtcag
1021 tcagtcacca ctcgtgcaat aagacatttt ctagctactt caaacattcc ccagtacctt
1081 cagttccagg atttaaaatg caagaaaaaa catttttact gctgcttagt ttttggactg
1141 aaaagatatt aaaactcaag aaggaccaag aagttttcat atgtatcaat atatatactc
1201 ctcactgtgt aacttaccta gaaatacaaa cttttccaat tttaaaaaat cagccatttc
1261 atgcaaccag aaactagtta aaagcttcta ttttcctctt tgaacactca agattgcatg
1321 gcaaagaccc agtcaaaatg atttacccct ggttaagttt ctgaagactt tgtacataca
1381 gaagtatggc tctgttcttt ctatactgta tgtttggtgc tttccttttg tcttgcatac
1441 tcaaaataac catgacacca aggttatgaa atagactact gtacacgtct acctaggttc
1501 aaaaagataa ctgtcttgct ttcatggaat agtcaagaca tcaaggtaag gaaacaggac
1561 tattgacagg actattgtac agtatgacaa gataaggctg aagatattct actttagtta
1621 gtatggaagc ttgtctttgc tctttctgat gctctcaaac tgcatctttt atttcatgtt
1681 gcccagtaaa agtatacaaa ttccctgcac tagcagaaga gaattctgta tcagtgtaac
1741 tgccagttca gttaatcaaa tgtcatttgt tcaattgtta atgtcacttt aaattaaaag
1801 tggtttatta cttgtttaat gacataacta cacagttaaa aaaaattttt ttacagtaat
1861 gatagcctcc aaggcagaaa cacttttcag tgttaagttt ttgtttactt gttcacaagc
1921 cattagggaa atttcatggg ataattagca ggctggtcta ccacctggac catgtaactc
1981 tagtgtcctt cctgattcat gcctgatatt gggatttttt ttttccagcc ttcttgatgc
2041 caaggggcta attaatatta acaactccca aagaaacagg catagaatct gcctcctttg
2101 accttgttca atcactatga agcagagtga aagctgtggt agagtggtta acagatacaa
2161 gtgtcagttt cttagttctc atttaagcac tagtggaatt tttttttttt gatatattag
2221 caagtctgtg atgtactttc actggctctg tttgtacatt gagattgttt gtttaacaat
2281 gctttctatg ttcatatact gtttatcttt ttccatggag tctccgggca aagaataaaa
2341 tatatttatt ttaaaaaaaa aaaaaaaaa
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