LOCUS BC050389 3941 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens mahogunin, ring finger 1, mRNA (cDNA clone MGC:51963
IMAGE:5755971), complete cds.
ACCESSION BC050389
VERSION BC050389.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3941)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3941)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: f Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 44917607.
FEATURES Location/Qualifiers
source 1..3941
/db_xref="H-InvDB:HIT000053435"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51963 IMAGE:5755971"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3941
/gene="MGRN1"
/gene_synonym="CD41B"
/gene_synonym="GP2B"
/gene_synonym="ITGA2B"
/gene_synonym="KIAA0544"
/gene_synonym="RNF156"
/db_xref="GeneID:23295"
/db_xref="HGNC:HGNC:20254"
/db_xref="MIM:607559"
CDS 110..1840
/gene="MGRN1"
/gene_synonym="CD41B"
/gene_synonym="GP2B"
/gene_synonym="ITGA2B"
/gene_synonym="KIAA0544"
/gene_synonym="RNF156"
/codon_start=1
/product="mahogunin, ring finger 1"
/protein_id="AAH50389.1"
/db_xref="GeneID:23295"
/db_xref="HGNC:HGNC:20254"
/db_xref="MIM:607559"
/translation="MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKF
DTPHPEGYLFGENMDLNFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKD
DADSPTEDGDKPRVLYSLEFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSET
VHYKRGVSQQFSLPSFKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAH
VLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSN
ECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPG
ALSPVSFSPVLAQSLEHDEHSCPFKKSKPHPASLASKKPKRETNSDSVPPGYEPISLL
EALNGLRAVSPAIPSAPLYEEITYSGISDGLSQASCPLAAIDHILDSSRQKGRPQSKA
PDSTLRSPSSPIHEEDEEKLSEDVDAPPPLGGAELALRESSSPESFITEEVDESSSPQ
QGTRAASIENVLQDSSPEHCGRGPPADIYLPGRPTSMETAHGLATTSPTWPPLGGPSP
DPSAAELTPL"
BASE COUNT 748 a 1322 c 1091 g 780 t
ORIGIN
1 tggacgagcg tccgtgcggc ctggtccggg ccatgtccgc gtgaggaccc cgccgctgtc
61 gccgctcccg ttccggccct ggcccctctg cccggcagcg cggcgcacca tgggctccat
121 tctcagccgc cgcatcgcgg gggtggagga catcgacatc caggcgaact cggcctatcg
181 ctaccctccg aagtccggaa actactttgc ttcgcacttt ttcatgggag gagagaaatt
241 cgacaccccc caccctgaag gttacctctt tggagagaac atggatctga acttcctggg
301 cagccgcccg gtccagtttc cctacgtcac tcctgccccc cacgagcccg tgaagacgct
361 gcggagcctg gtgaacatcc gcaaagactc cctgcggctg gtgaggtaca aagacgatgc
421 cgacagcccc accgaggacg gcgacaagcc ccgggtgctc tacagcctgg agttcacctt
481 cgacgccgat gcccgcgtgg ccatcaccat ctactgccag gcatcggagg agttcctgaa
541 cggcagggca gtatacagcc ccaagagccc ctcgctacag tccgagaccg tccactacaa
601 gagaggggtg agccagcagt tctccctgcc ctccttcaag attgacttct cggaatggaa
661 ggatgacgag ctgaactttg acctggaccg gggcgtgttt ccagtagtca tccaggctgt
721 ggtggacgaa ggagatgtgg tggaagtgac tggccacgcc cacgtgctct tggctgcctt
781 tgaaaagcac atggacggca gcttctctgt gaagccttta aagcagaagc aaattgtgga
841 ccgggtcagc tacctcctgc aggagatcta tggcattgag aacaagaaca accaggagac
901 caagccctcg gacgacgaga acagcgacaa cagcaacgag tgtgtggtgt gcctgtccga
961 cctgcgggac acgctgatcc tgccctgccg ccacctgtgc ctctgtacct cctgcgccga
1021 cacgctgcgc taccaggcca acaactgccc catctgccgg ctgcctttcc gggccctcct
1081 gcagatccgg gcggtgcgga agaagccagg agccctgtcc cccgtgtcct tcagccccgt
1141 cctggcccag agcctggagc atgatgagca ctcttgtccc tttaaaaaat caaagccgca
1201 ccccgcctcc ctggccagca agaaacctaa aagggaaaca aactctgaca gcgtcccacc
1261 tggctacgag cccatctcgc tgctcgaggc gctcaacggc ctccgggctg tctccccggc
1321 catcccctcg gcccctcttt atgaagaaat cacctattca ggcatctcgg acggcctgtc
1381 ccaggccagc tgtcccctcg cggctatcga ccacatcctg gacagcagcc gccagaaggg
1441 caggccgcag agcaaggccc ccgacagcac cctacggtcc ccgtcttccc ccatccacga
1501 agaggatgag gagaagctct ccgaggacgt ggacgcccct cccccactgg gtggcgcaga
1561 gctggccctg cgggaaagca gctcccctga gagtttcata acagaagagg ttgatgagtc
1621 gtcgtcacca cagcaaggga cccgagcagc ttccattgag aatgtcctgc aggacagcag
1681 ccccgagcac tgtggccgag gcccacctgc tgacatctac ctgccaggac ggcccacctc
1741 catggagacg gcccacggcc tcgccaccac cagccccacc tggcctccac ttggtggccc
1801 cagccccgat cccagcgccg ccgagctgac cccactctga gagcctggcc gagctggcag
1861 catggagccc tcggctcccc agactttgcc gaggggctgc tccggacccc gttgtgagcc
1921 ggcctcctgt ctgcatgccc cctgtggcca ccaggctccg aggggccgtg gtgactcttg
1981 atcaaagagc acagtgaact gtcccttctg agtctccctt ttctacagtt gatatatttg
2041 taactggtac aagatgaagg acagcagctt tccatcccta gttcagagcc cccgttcccc
2101 agggtcctgt gggctgagcg gctggggctg gggctgccca cgtgtggcct ccgctggctc
2161 tgcctgctcc tgcaacagtg cggtccctgc ccggagaact caggaggcct gcagaagaga
2221 actgattggt ggtcgaagca ccatcttcac agatgttcag gggcagtggg gggctccagg
2281 cacggtcaat gaaggaaaca gtgcctgtcc acccaccctg cgtgtcactg tggcggcctg
2341 gctgtcgctg ctttttgtcc tctgacgtgt ttgcgcggcc tcagtgccct ccctggtgcg
2401 tctgcgctgg ggccctcagt gctcggggcc ttggggtgca tgggcgccgc cctgggcagc
2461 tagagtgtct cagcccggtg ctgggcctgg ccgaggggcg gaggcacagc tgcttccagc
2521 agccagcatt cagtggcctt gtcaccaagc tccacacctc ctcctggtgc tggctttggt
2581 gacatcacaa ggcccctcca ggtgcagggg cttctgtttg gcaggcccct gccagggagg
2641 acctggtggc ctcctcattc tcttttgcca ttggaatgtc cccttgcagt tctcttctct
2701 tttttttttt ttgagatgga gtttcactct tgctgcccag gctggagtgc agtggctcaa
2761 tctcgggtca ctgcaacctc cgcctcccgg gttcaagtga tcgtcctgcc ttaggctcct
2821 gagtagctgg ggattacagg tgcctaccag catgctcggc taattttttt gtatttttag
2881 tagagaaggg atttcaccat gttggccggg ctggtctcaa actcctaagg tcatccacct
2941 gcctcggcct cccagagtgc tgagattaca ggcgtgagcc tccgcgcccg gcccccttgc
3001 agttctctct gatttggttt gttctgtctc aggcttctgt ggcaggactg gcccagggag
3061 gaggaagcca gcagcacacc tggggaatgg ggtcccggcc gggaggcttg gcctctgggc
3121 gacctcgtcc tgttttgttt gtttgtttgt ttgttttttt aaaggtaaac ctcctgggcc
3181 gcagatggca aagggagtgc ctgggcctgg tgacccaggg ctggatccac ccctgcggag
3241 ccctgggcca ggcaggtgtc tgctgctcac ctggctctgg agggctgccc tgcagctggg
3301 cctggggaca ggtcggctgt ggggcagctc agtaccctcc ctgaggctca cggtggctcc
3361 gagcatgagc tctgcctcct gggcgagacc cagcagtgga cagcacggtc ctcacaccca
3421 gctccctgca cacccaggcc agccacccct cccgctcgtg cacaggcacg cagatgcgct
3481 cacacgtaca cacacacaaa tgcacgccca cttgcacatg ctcacgcaca cgttcacaca
3541 tgcacactca cgctcacaca tgctgtcacg catacacaca cgcacatact cctgcacatg
3601 ttcccatgca tgtgtgtgca ctcggaccga gcatctccca cgcacctcta ccccacccca
3661 agcacctctc tccccccatg cacctctccc caacaacaca cacagccccc tgcaccgccc
3721 gccccccgcc cccaccaagg ccccagcctc tggccatcag tcctggtgcc agagctttgc
3781 gtgaagttcg ggccgcagag tggcccgctg ggactcccat gtgctgccgt ctgatgtgct
3841 cagatgggct catcgttggt tcgtttttac tgtatattta tagtaataaa atcatgcagc
3901 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//