LOCUS BC050362 1904 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens interleukin 16 (lymphocyte chemoattractant factor),
mRNA (cDNA clone IMAGE:6043943), partial cds.
ACCESSION BC050362
VERSION BC050362.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1904)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1904)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: i Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27262654.
FEATURES Location/Qualifiers
source 1..1904
/db_xref="H-InvDB:HIT000099170"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6043943"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1904
/gene="IL16"
/gene_synonym="HsT19289"
/gene_synonym="IL-16"
/gene_synonym="LCF"
/gene_synonym="prIL-16"
/db_xref="GeneID:3603"
/db_xref="HGNC:HGNC:5980"
/db_xref="MIM:603035"
CDS 177..>1904
/gene="IL16"
/gene_synonym="HsT19289"
/gene_synonym="IL-16"
/gene_synonym="LCF"
/gene_synonym="prIL-16"
/codon_start=1
/product="IL16 protein"
/protein_id="AAH50362.1"
/db_xref="GeneID:3603"
/db_xref="HGNC:HGNC:5980"
/db_xref="MIM:603035"
/translation="MDYSFDTTAEDPWVRISDCIKNLFSPIMSENHGHMPLQPNASLN
EEEGTQGHPDGTPPKLDTANGTPKVYKSADSSTVKKGPPVAPKPAWFRQSLKGLRNRA
SDPRGLPDPALSTQPAPASREHLGSHIRASSSSSSIRQRISSFETFGSSQLPDKGAQR
LSLQPSSGEAAKPLGKHEEGRFSGLLGRGAAPTLVPQQPEQVLSSGSPAASEARDPGV
SESPPPGRQPNQKTLPPGPDPLLRLLSTQAEESQGPVLKMPSQRARSFPLTRSQSCET
KLLDEKTSKLYSISSQVSSAVMKSLLCLPSSISCAQTPCIPKEGASPTSSSNEDSAAN
GSAETSALDTGFSLNLSELREYTEGLTEAKEDDDGDHSSLQSGQSVISLLSSEELKKL
IEEVKVLDEATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLAS
QEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSS
TDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIF
KGEKKKKKKK"
BASE COUNT 504 a 551 c 476 g 373 t
ORIGIN
1 gaccaagtcc tccacagagg gcgagccagg gtggagaaga gccagcccag cttggaaact
61 agaatttagg aagaaaagtc actgtatgat gtaatgcaca gctttggcct tgtttctgca
121 ctgtagtgac ccaaacatcc ccgataaaac acccactgct taagaggcag gctcggatgg
181 actatagctt tgataccaca gccgaagacc cttgggttag gatttctgac tgcatcaaaa
241 acttatttag ccccatcatg agtgagaacc atggccacat gcctctacag cccaatgcca
301 gcctgaatga agaagaaggg acacagggcc acccagatgg gaccccacca aagctggaca
361 ccgccaatgg cactcccaaa gtttacaagt cagcagacag cagcactgtg aagaaaggtc
421 ctcctgtggc tcccaagcca gcctggtttc gccaaagctt gaaaggtttg aggaatcgtg
481 cttcagaccc aagagggctc cctgatcctg ccttgtccac ccagccagca cctgcttcca
541 gggagcacct aggatcacac atccgggcct cctcctcctc ctcctccatc aggcagagaa
601 tcagctcctt tgaaaccttt ggctcctctc aactgcctga caaaggagcc cagagactga
661 gcctccagcc ctcctctggg gaggcagcaa aacctcttgg gaagcatgag gaaggacggt
721 tttctggact cttggggcga ggggctgcac ccactcttgt gccccagcag cctgagcaag
781 tactgtcctc ggggtcccct gcagcctccg aggccagaga cccaggtgtg tctgagtccc
841 ctcccccagg gcggcagccc aatcagaaaa ctctcccccc tggcccggac ccgctcctaa
901 ggctgctgtc aacacaggct gaggaatctc aaggcccagt gctcaagatg cctagccagc
961 gagcacggag cttccccctg accaggtccc agtcctgtga gacgaagcta cttgacgaaa
1021 agaccagcaa actctattct atcagcagcc aagtgtcatc ggctgtcatg aaatccttgc
1081 tgtgccttcc atcttctatc tcctgtgccc agactccctg catccccaag gaaggggcat
1141 ctccaacatc atcatccaac gaagactcag ctgcaaatgg ttctgctgaa acatctgcct
1201 tggacacagg gttctcgctc aacctttcag agctgagaga atatacagag ggtctcacgg
1261 aagccaagga agacgatgat ggggaccaca gttcccttca gtctggtcag tccgttatct
1321 ccctgctgag ctcagaagaa ttaaaaaaac tcatcgagga ggtgaaggtt ctggatgaag
1381 caacattaaa gcaattagac ggcatccatg tcaccatctt acacaaggag gaaggtgctg
1441 gtcttgggtt cagcttggca ggaggagcag atctagaaaa caaggtgatt acggttcaca
1501 gagtgtttcc aaatgggctg gcctcccagg aagggactat tcagaagggc aatgaggttc
1561 tttccatcaa cggcaagtct ctcaagggga ccacgcacca tgatgccttg gccatcctcc
1621 gccaagctcg agagcccagg caagctgtga ttgtcacaag gaagctgact ccagaggcca
1681 tgcccgacct caactcctcc actgactctg cagcctcagc ctctgcagcc agtgatgttt
1741 ctgtagaatc tacagcagag gccacagtct gcacggtgac actggagaag atgtcggcag
1801 ggctgggctt cagcctggaa ggagggaagg gctccctaca cggagacaag cctctcacca
1861 ttaacaggat tttcaaaggt gaaaaaaaaa aaaaaaaaaa aaaa
//