LOCUS BC050309 3425 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens nerve growth factor receptor (TNFR superfamily, member 16), mRNA (cDNA clone MGC:48326 IMAGE:5263715), complete cds. ACCESSION BC050309 VERSION BC050309.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3425) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3425) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 90 Row: o Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4505392. FEATURES Location/Qualifiers source 1..3425 /db_xref="H-InvDB:HIT000053407" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:48326 IMAGE:5263715" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3425 /gene="NGFR" /gene_synonym="CD271" /gene_synonym="p75(NTR)" /gene_synonym="TNFRSF16" /db_xref="GeneID:4804" /db_xref="HGNC:HGNC:7809" /db_xref="MIM:162010" CDS 126..1409 /gene="NGFR" /gene_synonym="CD271" /gene_synonym="p75(NTR)" /gene_synonym="TNFRSF16" /codon_start=1 /product="nerve growth factor receptor (TNFR superfamily, member 16)" /protein_id="AAH50309.1" /db_xref="GeneID:4804" /db_xref="HGNC:HGNC:7809" /db_xref="MIM:162010" /translation="MGAGATGRAMDGPRLLLLLLLGVSLGGAKEACPTGLYTHSGECC KACNLGEGVAQPCGANQTVCEPCLDSVTFSDVVSATEPCKPCTECVGLQSMSAPCVEA DDAVCRCAYGYYQDETTGRCEACRVCEAGSGLVFSCQDKQNTVCEECPDGTYSDEANH VDPCLPCTVCEDTERQLRECTRWADAECEEIPGRWITRSTPPEGSDSTAPSTQEPEAP PEQDLIASTVAGVVTTVMGSSQPVVTRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWN SCKQNKQGANSRPVNQTPPPEGEKLHSDSGISVDSQSLHDQQPHTQTASGQALKGDGG LYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWAT QDSATLDALLAALRRIQRADLVESLCSESTATSPV" BASE COUNT 689 a 1105 c 1033 g 598 t ORIGIN 1 agcgcgagcc gagccgcggc cagctccggc gggcaggggg ggcgctggag cgcagcgcag 61 cgcagcccca tcagtccaca aagcggaccg agctggaagt cgagcgctgc cgcgggaggc 121 gggcgatggg ggcaggtgcc accggccgcg ccatggacgg gccgcgcctg ctgctgttgc 181 tgcttctggg ggtgtccctt ggaggtgcca aggaggcatg ccccacaggc ctgtacacac 241 acagcggtga gtgctgcaaa gcctgcaacc tgggcgaggg tgtggcccag ccttgtggag 301 ccaaccagac cgtgtgtgag ccctgcctgg acagcgtgac gttctccgac gtggtgagcg 361 cgaccgagcc gtgcaagccg tgcaccgagt gcgtggggct ccagagcatg tcggcgccat 421 gcgtggaggc cgacgacgcc gtgtgccgct gcgcctacgg ctactaccag gatgagacga 481 ctgggcgctg cgaggcgtgc cgcgtgtgcg aggcgggctc gggcctcgtg ttctcctgcc 541 aggacaagca gaacaccgtg tgcgaggagt gccccgacgg cacgtattcc gacgaggcca 601 accacgtgga cccgtgcctg ccctgcaccg tgtgcgagga caccgagcgc cagctccgcg 661 agtgcacacg ctgggccgac gccgagtgcg aggagatccc tggccgttgg attacacggt 721 ccacaccccc agagggctcg gacagcacag cccccagcac ccaggagcct gaggcacctc 781 cagaacaaga cctcatagcc agcacggtgg caggtgtggt gaccacagtg atgggcagct 841 cccagcccgt ggtgacccga ggcaccaccg acaacctcat ccctgtctat tgctccatcc 901 tggctgctgt ggttgtgggt cttgtggcct acatagcctt caagaggtgg aacagctgca 961 agcagaacaa gcaaggagcc aacagccggc cagtgaacca gacgccccca ccagagggag 1021 aaaaactcca cagcgacagt ggcatctccg tggacagcca gagcctgcat gaccagcagc 1081 cccacacgca gacagcctcg ggccaggccc tcaagggtga cggaggcctc tacagcagcc 1141 tgcccccagc caagcgggag gaggtggaga agcttctcaa cggctctgcg ggggacacct 1201 ggcggcacct ggcgggcgag ctgggctacc agcccgagca catagactcc tttacccatg 1261 aggcctgccc cgttcgcgcc ctgcttgcaa gctgggccac ccaggacagc gccacactgg 1321 acgccctcct ggccgccctg cgccgcatcc agcgagccga cctcgtggag agtctgtgca 1381 gtgagtccac tgccacatcc ccggtgtgag cccaaccggg gagcccccgc cccgccccac 1441 attccgacaa ccgatgctcc agccaacccc tgtggagccc gcacccccac cctttggggg 1501 gggcccgcct ggcagaactg agctcctctg ggcaggacct cagagtccag gccccaaaac 1561 cacagccctg tcagtgcagc ccgtgtggcc ccttcacttc tgaccacact tcctgtccag 1621 agagagaagt gcccctgctg cctccccaac cctgcccctg ccccgtcacc atctcaggcc 1681 acctgccccc ttctcccaca ctgctaggtg ggccagccac tcccaccaca gcaggtgtca 1741 tatatggggg gccaacacca gggatggtac tagggggaag tgacaaggcc ccagagactc 1801 agagggagga atcgaggaac cagagccatg gactctacac tgtgaacttg gggaacaagg 1861 gtggcatccc agtggcctca accctccctc agcccctctt gccccccacc ccagcctaag 1921 atgaagagga tcggaggctt gtcagagctg ggaggggttt tcgaagctca gcccaccccc 1981 ctcattttgg atataggtca gtgaggccca gggagaggcc atgattcgcc caaagccaga 2041 cagcaacggg gaggccaagt gcaggctggc accgccttct ctaaatgagg ggcctcaggt 2101 ttgcctgagg gcgaggggag ggtggcaggt gaccttctgg gaaatggctt gaagccaagt 2161 cagctttgcc ttccacgctg tctccagacc cccacccctt ccccactgcc tgcccacccg 2221 tggagatggg atgcttgcct agggcctggt ccatgatgga gtcaggtttg gggttcgtgg 2281 aaagggtgct gcttccctct gcctgtcact ctcaggcatg cctgtgtgac atcagtggca 2341 tggctccagt ctgctgccct ccatcccgac atggacccgg agctaacact ggcccctaga 2401 atcagcctag gggtcaggga ccaaggaccc ctcaccttgc aacacacaga cacacgcaca 2461 cacacacaca ggaggagaaa tctcactttt ctccatgagt tttttctctt gggctgagac 2521 tggatactgc ccggggcagc tgccagagaa gcatcggagg aaattgaggt ctgctcggcc 2581 gtcttcactc gcccccgggt ttggcgggcc aaggactgcc gaccgaggct ggagctggcg 2641 tctgtcttca agggcttaca cgtggaggaa tgctccccca tcctcccctt ccctgcaaac 2701 atggggttgg ctgggcccag aaggttgcga tgaagaaaag cgggccagtg tgggaatgcg 2761 gcaagaagga attgacttcg actgtgacct gtggggattt ctcccagctc tagacaaccc 2821 tgcaaaggac tgttttttcc tgagcttggc cagaaggggg ccatgaggcc tcagtggact 2881 ttccaccccc tccctggcct gttctgtttt gcctgaagtt ggaatgagtg tggctcccct 2941 ctatttagca tgacaagccc caggcaggct gtgcgctgac aaccaccgct ccccagccca 3001 gggttccccc agccctgtgg aagggactag gagcactgta gtaaatggca attctttgac 3061 ctcaacctgt gatgagggga ggaaactcac ctgctggccc ctcacctggg cacctgggga 3121 gtgggacaga gtctgggtgt atttattttc ctccccagca ggtggggagg gggtttgggg 3181 gcttgcaagt atgttttagc atgtgtttgg ttctggggcc cctttttact ccccttgagc 3241 tgagatggaa cccttttggc ccccgagctg ggggccatga gctccagacc cccagcaacc 3301 ctcctatcac ctcccctcct tgcctcctgt gtaatcattt ctttggccct cctgaaactt 3361 acacacaaaa cgttaagtga tgaacattaa atagcaaaga aagaaaaata aaaaaaaaaa 3421 aaaaa //