LOCUS BC050308 4342 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens plakophilin 4, mRNA (cDNA clone MGC:48319
IMAGE:5262792), complete cds.
ACCESSION BC050308
VERSION BC050308.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4342)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4342)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: n Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 53829373.
FEATURES Location/Qualifiers
source 1..4342
/db_xref="H-InvDB:HIT000053406"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48319 IMAGE:5262792"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4342
/gene="PKP4"
/gene_synonym="p0071"
/db_xref="GeneID:8502"
/db_xref="HGNC:HGNC:9026"
/db_xref="MIM:604276"
CDS 127..3576
/gene="PKP4"
/gene_synonym="p0071"
/codon_start=1
/product="plakophilin 4"
/protein_id="AAH50308.1"
/db_xref="GeneID:8502"
/db_xref="HGNC:HGNC:9026"
/db_xref="MIM:604276"
/translation="MPAPEQASLVEEGQPQTRQEAASTGPGMEPETTATTILASMKEQ
ELQFQRLTRELEVERQIVASQLERCRLGAESPSIASTSSTEKSFPWRSTDVPNTGVSK
PRVSDAVQPNNYLIRTEPEQGTLYSPEQTSLHESEGSLGNSRSSTQMNSYSDSGYQEA
GSFHNSQNVSKADNRQQHSFIGSTNNHVVRNSRAEGQTLVQPSVANRAMRRVSSVPSR
AQSPYYVISTGVSPSRWSLRTSLGSGFGSPSVTDPRPLNPSAYSSTTLPAARAASPYS
QRPASPTAIRRIGSVTSRQTSNPNGPTPQYQTTARVGSPLTLTDAQTRVASPSQGQVG
SSSPKRSGMTAVPQHLGPSLQRTVHDMEQFGQQQYDIYERMVPPRPDSLTGLRSSYAS
QHSQLGQDLRSAVSPDLHITPIYEGRTYYSPVYRSPNHGTVELQGSQTALYRTGSVGI
GNLQRTSSQRSTLTYQRNNYALNTTATYAEPYRPIQYRVQECNYNRLQHAVPADDGTT
RSPSIDSIQKDPREFAWRDPELPEVIHMLQHQFPSVQANAAAYLQHLCFGDNKVKMEV
CRLGGIKHLVDLLDHRVLEVQKNACGALRNLVFGKSTDENKIAMKNVGGIPALLRLLR
KSIDAEVRELVTGVLWNLSSCDAVKMTIIRDALSTLTNTVIVPHSGWNNSSFDDDHKI
KFQTSLVLRNTTGCLRNLSSAGEEARKQMRSCEGLVDSLLYVIHTCVNTSDYDSKTVE
NCVCTLRNLSYRLELEVPQARLLGLDELDDLLGKESPSKDSEPSCWGKKKKKKKRTPQ
EDQWDGVGPIPGLSKSPKGVEMLWHPSVVKPYLTLLAESSNPATLEGSAGSLQNLSAG
NWKFAAYIRAAVRKEKGLPILVELLRMDNDRVVSSVATALRNMALDVRNKELIGKYAM
RDLVNRLPGGNGPSVLSDETMAAICCALHEVTSKNMENAKALADSGGIEKLVNITKGR
GDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFITPVSTLERDRFKSHPSLS
TTNQQMSPIIQSGSSKPSPIYISSYSSPAREQNRRLQHQQLYYSQDDSNRKNFDAYRL
YLQSPHSYEDPYFDDRVHFPASTDYSTQYGLKSTTNYVDFYSTKRPSYRAEQYPGSPD
SWV"
BASE COUNT 1244 a 1038 c 1049 g 1011 t
ORIGIN
1 gggggcgggc agccgcgccg ccgcggcact tttttaattt tttcgggtgc cgcagcggcg
61 acccctcggc gccgatgtcc ctgatccctg gagcgacgac ggccgctgcc taagctggaa
121 agaggaatgc cagctcctga gcaggcctca ttggtggagg aggggcaacc acagacccgc
181 caggaagctg cctcaactgg cccaggcatg gaacccgaga ccacagccac cactattcta
241 gcatccatga aggagcagga gcttcagttt cagcgactca cccgagaact ggaagtggaa
301 aggcagattg ttgccagtca gctagaaaga tgtaggcttg gagcagaatc accaagcatc
361 gccagcacca gctcaactga gaagtcattt ccttggagat caacagacgt gccaaatact
421 ggtgtaagca aacctagagt ttctgacgct gtccagccca acaactatct catcaggaca
481 gagccagaac aaggaaccct ctattcacca gaacagacat ctctccatga aagtgaggga
541 tcattgggta actcaagaag ttcaacacaa atgaattctt attccgacag tggataccag
601 gaagcaggga gtttccacaa cagccagaac gtgagcaagg cagacaacag acagcagcat
661 tcattcatag gatcaactaa caaccatgtg gtgaggaatt caagagctga aggacaaaca
721 ctggttcagc catcagtagc caatcgggcc atgagaagag ttagttcagt tccatctaga
781 gcacagtctc cttattatgt tatcagcaca ggcgtgtctc cttcaaggtg gtctctgaga
841 acttctctgg gtagtggatt tggctctccg tcagtgaccg accccagacc tctgaacccc
901 agtgcatatt cctccaccac attacctgct gcacgggcag cctctccgta ctcacagaga
961 cccgcctccc caacagctat acggcggatt gggtcagtca cctcccggca gacctccaat
1021 cccaacggac caacccctca ataccaaacc accgccagag tggggtcccc actgaccctg
1081 acggatgcac agactcgagt agcttcccca tcccaaggcc aggtggggtc gtcgtccccc
1141 aaacgctcag ggatgaccgc cgtaccacag catctgggac cttcactgca aaggactgtt
1201 catgacatgg agcaattcgg acagcagcag tatgacattt atgagaggat ggttccaccc
1261 aggccagaca gcctgacagg cttacggagt tcctatgcta gtcagcatag tcagcttggg
1321 caagaccttc gttctgccgt gtctcccgac ttgcacatta ctcctatata tgaggggagg
1381 acctattaca gcccagtgta ccgcagccca aaccatggaa ctgtggagct ccaaggatcg
1441 cagacggcgt tgtatcgcac aggttcagta ggtattggaa atctacaaag gacatccagc
1501 caacgaagta cccttacata ccaaagaaat aattatgctc tgaacacaac agctacctac
1561 gcggagccct acaggcctat acaataccga gtgcaagagt gcaattataa caggcttcag
1621 catgcagtgc cggctgatga tggcaccaca agatccccat caatagacag cattcagaag
1681 gaccccaggg agtttgcctg gcgtgatcct gagttgcctg aggtcattca catgcttcag
1741 caccagttcc catctgttca ggcaaatgca gcggcctacc tgcagcacct gtgctttggt
1801 gacaacaaag tgaagatgga ggtgtgtagg ttagggggaa tcaagcatct ggttgacctt
1861 ctggaccaca gagttttgga agttcagaag aatgcttgtg gtgcccttcg aaacctcgtt
1921 tttggcaagt ctacagatga aaataaaata gcaatgaaga atgttggtgg gatacctgcc
1981 ttgttgcgac tgttgagaaa atctattgat gcagaagtaa gggagcttgt tacaggagtt
2041 ctttggaatt tatcctcatg tgatgctgta aaaatgacaa tcattcgaga tgctctctca
2101 accttaacaa acactgtgat tgttccacat tctggatgga ataactcttc ttttgatgat
2161 gatcataaaa ttaaatttca gacttcacta gttctgcgta acacgacagg ttgcctaagg
2221 aacctcagct ccgcggggga agaagctcgg aagcaaatgc ggtcctgcga ggggctggta
2281 gactcactgt tgtatgtgat ccacacgtgt gtgaacacat ccgattacga cagcaagacg
2341 gtggagaact gcgtgtgcac cctgaggaac ctgtcctatc ggctggagct ggaggtgccc
2401 caggcccggt tactgggact ggacgaattg gatgacttac taggaaaaga gtctcccagc
2461 aaagactctg agccaagttg ctgggggaag aagaagaaaa agaaaaagag gactccgcaa
2521 gaagatcaat gggatggagt tggtcctatc ccaggactgt cgaagtcccc caaaggggtt
2581 gagatgctgt ggcacccatc ggtggtaaaa ccatatctga ctcttctagc agaaagttcc
2641 aacccagcca ccttggaagg ctctgcaggg tctctccaga acctctctgc tggcaactgg
2701 aagtttgcag catatatccg ggcggccgtc cgaaaagaaa aggggctccc catccttgtg
2761 gagcttctga gaatggataa cgatagagtt gtttcttccg tggcaacagc cttgaggaat
2821 atggcactag atgttcgcaa caaggagctc ataggcaaat acgccatgcg agacctggtc
2881 aaccggctcc ccggcggcaa tggccccagt gtcttgtctg atgagaccat ggcagccatc
2941 tgctgtgctc tgcacgaggt caccagcaaa aacatggaga acgcaaaagc cctggccgac
3001 tcaggaggca tagagaagct ggtgaacata accaaaggca ggggcgacag atcatctctg
3061 aaagtggtga aggcagcagc ccaggtcttg aatacattat ggcaatatcg ggacctccgg
3121 agcatttata aaaaggatgg gtggaatcag aaccatttta ttacacctgt gtcgacattg
3181 gagcgagacc gattcaaatc acatccttcc ttgtctacca ccaaccaaca gatgtcaccc
3241 atcattcagt caggctccag caaaccttca ccaatttaca tcagttccta ttcctcacca
3301 gcaagagaac aaaatagacg gctacagcat caacagctgt attatagtca agatgactcc
3361 aacagaaaga actttgatgc atacagattg tatttgcagt ctcctcatag ctatgaagat
3421 ccttattttg atgaccgagt tcactttcca gcttctactg attactcaac acagtatgga
3481 ctgaaatcga ccacaaatta tgtagacttt tattccacta aacgaccttc ttatagagca
3541 gaacagtacc cagggtcccc agactcatgg gtgtagcatc aagatgccca acagaggaac
3601 tctttctttc taaccttgtt cagattgagg tgaaaagtcc atcttgctga tttgatgatt
3661 gaaatgtgaa agtgaagtgg aaggaatgaa tgaagtgtgt tttttttttc ttttttgagg
3721 aattatcagg gaagtgagga aatgtttggg agaggacttt ctaagctcta tttaggtgtt
3781 agatctaatt acttatagat tctgtagtct ggtgaaggtg tgggtgacgt gatgagaggt
3841 ttgagaaatg ggtgaaatga aatgggggat atgtaggtca aatcaaatta aagatgattt
3901 ttttaatgtg aataaagtta tgttctgata gtttgtacag aaaaaataaa atggatgccc
3961 atgttttatt gctattacta aatgtcaaga ttgtatgcta ttatgtcttg taaatttctt
4021 ttgttggtgt aaatatggaa atgccacatt ggttaagtgc catcatttgt aatgcaatgt
4081 gtcacttgaa aagagatttg aagaaactga caacttcaaa aacaaatgag aagcccaagg
4141 aactgtgagc aattaaaagc aaaccgcgac accctttgtc tccaccacac atagtgtact
4201 ttggaagcac aacgtccagg ctggtaccgc agcgccatgc ccattcctcg cctcgttcat
4261 aggacacttc actgccattt tctattcaca taaaagaaaa ataaatgtgg aaatttcatc
4321 cttggacaaa aaaaaaaaaa aa
//