LOCUS BC050281 6016 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens PTPRF interacting protein, binding protein 1 (liprin
beta 1), mRNA (cDNA clone MGC:39493 IMAGE:5276255), complete cds.
ACCESSION BC050281
VERSION BC050281.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6016)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6016)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: k Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29294626.
FEATURES Location/Qualifiers
source 1..6016
/db_xref="H-InvDB:HIT000053401"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39493 IMAGE:5276255"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..6016
/gene="PPFIBP1"
/gene_synonym="hSGT2"
/gene_synonym="hSgt2p"
/gene_synonym="L2"
/db_xref="GeneID:8496"
/db_xref="MIM:603141"
CDS 284..3319
/gene="PPFIBP1"
/gene_synonym="hSGT2"
/gene_synonym="hSgt2p"
/gene_synonym="L2"
/codon_start=1
/product="PPFIBP1 protein"
/protein_id="AAH50281.1"
/db_xref="GeneID:8496"
/db_xref="MIM:603141"
/translation="MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMG
SLRALHLVEDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVY
QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLNATEEMLQQELL
SRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDKFRDTEGLIQEINDLRLKVSEMD
SERLQYEKKLKSTKSLMAKLSSMKIKVGQMQYEKQRMEQKWESLKDELASLKEQLEEK
ESEVKRLQEKLVCKMKGEGVEIVDRDIEVQKMKKAVESLMAANEEKDRKIEDLRQCLN
RYKKMQDTVVLAQGKDGEYEELLNSSSISSLLDAQGFSDLEKSPSPTPVMGSPSCDPF
NTSVPEEFHTTILQVSIPSLLPATVSMETSEKSKLTPKPETSFEENDGNIILGATVDT
QLCDKLLTSSLQKSSSLGNLKKETSDGEKETIQKTSEDRAPAESRPFGTLPPRPPGQD
TSMDDNPFGTRKVRSSFGRGFFKIKSNKRTASAPNLAETEKETAEHLDLAGASSRPKD
SQRNSPFQIPPPSPDSKKKSRGIMKLFGKLRRSQSTTFNPDDMSEPEFKRGGTRATAG
PRLGWSRDLGQSNSDLDMPFAKWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQAS
QQDLEKELGIKHSLHRKKLQLALQALGSEEETNHGKLDFNWVTRWLDDIGLPQYKTQF
DEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENT
IAPSEVQKWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIP
PNKTLLRRHLATHFNLLIGAEAQHQKRDAMELPDYVLLTATAKVKPKKLAFSNFGNLR
KKKQEDGEEYVCPMELGQASGSASKKGFKPGLDMRLYEEDDLDRLEQMEDSEGTVRQI
GAFSEGINNLTHMLKEDDMFKDFAARSPSASITDEDSNV"
BASE COUNT 1800 a 1206 c 1353 g 1657 t
ORIGIN
1 ggtttcctga catggtgtag tgcaggcagg gtggggaaag gacggggaag gactcgtgtg
61 ctgcgagctg gcggccgggc cggagtgctg gggctttgaa ctccgagagg aggtggacca
121 gaacttttgg aactagtgcc ggcggctctc caccccccag tataaaagaa cgtgtggatc
181 actttgctga gtacatccaa gatttgaaga actgaaataa atcagcttta aacctgcttt
241 ttaaaaatat ctgggttgga atttgcccct gacaaataat aaaatgatga gtgatgcaag
301 tgacatgttg gctgcagcgt tggagcagat ggatggtatc atagcaggtt ctaaggctct
361 ggaatattcc aatgggattt ttgattgcca atctcccacc tctccattca tgggaagttt
421 gcgagctctg caccttgtgg aagacctgcg tggattgtta gagatgatgg aaacagatga
481 gaaagaaggc ttgagatgcc agatcccaga ttcaacagca gaaacgcttg ttgagtggct
541 tcagagtcaa atgacaaatg gacacctacc agggaacgga gatgtgtatc aagaaaggct
601 ggcacgttta gaaaatgata aagaatccct cgttcttcag gtaagtgtgt taacagacca
661 ggtggaggct cagggagaga agattcgaga tttggagttt tgtcttgaag agcacagaga
721 gaagttgaat gccacagaag aaatgctgca gcaggagctt ctaagtagga catccttaga
781 aactcagaag ttggatctga tggctgaaat atctaacttg aagttgaaac tgacagctgt
841 agagaaggac agattggatt atgaagataa gttcagagac acagaggggc tgattcagga
901 gatcaatgat ttgaggttaa aagttagtga aatggacagt gagagacttc agtatgaaaa
961 aaagcttaaa tcaaccaaat ctttaatggc caaactttct agcatgaaaa tcaaggtggg
1021 tcagatgcag tatgaaaagc agcggatgga acaaaaatgg gagtcactga aggatgaact
1081 ggcatcttta aaagaacaac tagaagaaaa ggaatctgaa gtaaaaaggc tacaagaaaa
1141 attggtttgc aagatgaaag gagaaggggt tgaaattgtt gatagagaca tcgaagtaca
1201 aaaaatgaaa aaagctgtgg agtccttgat ggcagcaaat gaagaaaagg atcggaaaat
1261 agaagatctt cgacagtgcc tgaacaggta caagaaaatg caagacacgg tggtactggc
1321 ccaaggcaaa gatggagaat atgaagagct gctcaattcc agttccatct cctctttgct
1381 ggatgcacag ggtttcagtg atctggagaa aagtccatca cccactccag taatgggatc
1441 tcccagttgt gacccattta acacaagtgt tcccgaagag ttccatacta ccatcttgca
1501 agtttccatc ccttcattat tgccagcaac tgtaagcatg gaaacttctg aaaaatcaaa
1561 gttgactcct aagccagaga cttcatttga agaaaatgat ggaaacataa tccttggtgc
1621 cactgttgat acccaactgt gtgataaact tttaacttca agtctgcaga agtccagcag
1681 cctgggcaat ctgaagaaag agacatctga tggggaaaag gaaactattc agaagacttc
1741 agaggacaga gctccggcag aaagcaggcc atttgggacc cttcctccca ggcccccagg
1801 gcaggacacc tccatggatg acaacccctt cggcactcga aaagtcagat cttcctttgg
1861 ccggggcttt tttaaaatca aaagtaacaa gagaacagca agtgcaccaa acttagctga
1921 aacagaaaaa gagacagcag agcacctaga tctggctggt gcttcttctc ggccaaaaga
1981 ttcacagagg aacagtccct tccagatacc gcctccatct ccagattcca aaaagaaatc
2041 cagaggtatc atgaaactct ttggaaaact taggagaagt caatcaacta cattcaaccc
2101 agatgacatg tctgagcctg aattcaaaag aggagggaca agggcaaccg cggggccccg
2161 attaggttgg tctcgagact tgggacagtc taacagtgac ttggatatgc catttgccaa
2221 gtggaccaag gagcaggttt gcaattggct gatggaacag ggcttgggct cgtacctgaa
2281 ttctggcaag cactggattg catctggcca aacgcttttg caggcttctc aacaagatct
2341 agagaaggaa cttggaatca agcattcact tcatcgaaag aaactccagc tagcactcca
2401 agccctggga tctgaagaag aaaccaatca tgggaagctg gatttcaact gggtcactag
2461 atggttggat gacattggcc tccctcaata taagacccag tttgatgaag gacgggttga
2521 tggtcgaatg ctacattaca tgactgttga tgacttactg tctctgaagg ttgtaagtgt
2581 gctacaccat ctcagtatca aaagggccat ccaggtcctg aggatcaata actttgaacc
2641 aaactgtcta cggaggcggc catctgatga gaataccatc gccccatcag aagttcagaa
2701 gtggactaac catcgagtga tggagtggct gcgctccgtg gacttggcag aatatgcgcc
2761 caatctcaga ggcagtggtg tccatggtgg gctcatggtt ctagagcctc gttttaacgt
2821 agaaacaatg gctcagttat tgaacatccc acccaataag actttgctgc gaagacattt
2881 ggccactcat ttcaaccttc tgattggggc tgaggcacag caccagaagc gagatgccat
2941 ggagctgccg gattatgtac ttctaacagc tactgccaaa gtgaagccaa agaaacttgc
3001 ctttagcaat tttgggaatt tgagaaagaa gaaacaggaa gatggtgaag aatatgtttg
3061 tccaatggaa ttgggacagg catcaggaag tgcatctaag aaaggattta aacctggttt
3121 ggatatgcgc ctgtatgagg aagatgattt ggaccggtta gagcagatgg aagattcaga
3181 agggacagtg agacagatag gtgcattctc tgaaggcatc aacaatctga cgcacatgtt
3241 aaaagaagat gacatgttta aagattttgc tgcccgttcc cccagtgcca gcattacaga
3301 tgaagactca aacgtttgac cgtagcacct ggatgaacat taggagtgct tagtcttttt
3361 tctacttgct tttccaaaca ctcacagtat atacaacagg cagcggattg tctattgttt
3421 gttgttctaa cttctgctgt cgagaagttt aaacagaaag caggagtaat gtgccgattc
3481 tgaagttgcc acaaaaataa gacactggtg aatgagagta taattgtttt tcttctattt
3541 aatgtaaaaa tctgtgatat attatattta aagtgttgca tttaagatga gtattttacc
3601 agagtgtttc cattcatatc cgcggtatgg aggatttgag gaacagtaac caggatgtga
3661 atgattttgt tacatcagtg ttcactgtag ccacctaagt aggacattat atgatttcag
3721 aatcaatatg tggaacttct ttaagcattc agtgtgccca ctaaatgcca gccacacctc
3781 cacttgcctc ttattgtctt atttttatat atttttctaa atatatgtat atatacagta
3841 catagaaaat agaactttta ttttgtgacc taaggacgat ggtgaaaaga tcacgttttc
3901 aaaacaatct ggtgatcaga atgttcatat accagctggt ttctgaagag gtcagaatga
3961 tctttctcca tactgacttt taacaatgtt gatcattgag gctaaattaa tatatatgaa
4021 atattccttt ttgatgacac cacaaaattg ttgaacagtt taagaatttc aaccttaatc
4081 ttggatccct ttacctcata tggaagaact tgagggacat tagtatactt ttttttaaga
4141 tggagtcttg ctctgtcacc caggttggag tgccatggca tgatcttggc tcactgcaac
4201 ctccacctcc tgggtcaagc cattctgctt cagccccaag taggtgggac tccaggcatg
4261 caccaccatg cctggctaat ttttgcattt ttagtagaga cagggtttca ccatattggc
4321 caggctggga ctcgaactcc tgaccttgtg atctgcccgc ctcagcctcc caaagtactg
4381 ggattatagg catgagccac cacgcccagc ctgttatttt tttattatta ttgttttttt
4441 ttagtgacag agtctcattc tgttgcccat gctggagtgc agtggcgtga tcatagctca
4501 ctgcagcctt gaattcctag gctccagtga tcctctcacc tcagcttccc taatagctag
4561 gattacaggt gtgtggcctc ccaccccacc ccacccttca cacctggctg atttttcaaa
4621 aagttttttt gtagaaacag ggtctcacca tgttgtccag cctggtctca aactcctgtc
4681 ctcaagtgat cctcccacct cagcctttca aagtgctgga attacaggtg tgagccactc
4741 tgcctggcct accactaact tgaatacatt cagaatcacc tcctctcccc aaaatttgta
4801 gaaatagttt ttgaggaagc caaaagcaaa gcagaaacct ttacagtatt gtttcttttc
4861 tctttgttaa ctgtgtcatt acagcaaaat actagcagtc tgcctaaaca tgttcattgt
4921 acatttctca ggctatcaat gaatggaggt ttttaaaaag ttgaatattt gtctgaacat
4981 tttatttcaa agttcaaaaa aacagaggct gcaaaattca ttttataatg gctattttgt
5041 gacgataaga tgtagttcat gtttttctgt agcactgggc ccaaatattc tttgtaaaga
5101 aaatcgctgc agcaaaaact gttactgtgt ttattatatt tgtagaagta ttagaaaaat
5161 attctatttt ttattcagtg ctgcgtaatt acccatggta gccaacccta caaaagacag
5221 gttttcacaa attgaggtgg aggtgggcgg ttcagtatct gccactggac ttgattataa
5281 actgtatttg aatatcagtg gtattatctt ttaagttgtc agcaagttac caaggtattc
5341 attaaagaac ttgtaatatc aaattactat ttattcataa caattgattt gatgctaata
5401 ataattttct ttaaactcta ccattcatta tgtggtaact gtattgaact tactttattt
5461 ggattttatt ttaatgtgac tagatgtcac cacttcaaaa aatcaatttg ttcttagaac
5521 ctggttgaaa ataccaggaa actgttacag acgccatttt tttttttttt tgagacggag
5581 tcttgctctg ttgcccaggc tggagtgcag tggcacaatc tcagctcact gcaagctccg
5641 cctcctgggt tcacgccatt ctcccacctc agcttcccaa gcagctggga ctacaggtac
5701 ctgccaccac gcctggctaa ttttgttttt gtatttttag tagagacggg gtttcaccgt
5761 gttagccagg aaggtctcaa tctcctgacc tcgtgaatcg cccccctcgg tctcccaaag
5821 tgctgggatt acaggcgtga gccaccttgc ccggcccaaa tattttttat tcaggatggt
5881 ataacctaac tgataatagg taataaggtt aaattttttt atgacgtatt ttatttacaa
5941 atatcataca ctgctggtgt taccatatga aaggaaataa agtcaattga taattgccac
6001 aaaaaaaaaa aaaaaa
//