LOCUS BC050085 3383 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens LIM domain only 3 (rhombotin-like 2), mRNA (cDNA clone
MGC:50972 IMAGE:5274811), complete cds.
ACCESSION BC050085
VERSION BC050085.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3383)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3383)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: e Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41350202.
FEATURES Location/Qualifiers
source 1..3383
/db_xref="H-InvDB:HIT000099118"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50972 IMAGE:5274811"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3383
/gene="LMO3"
/gene_synonym="DAT1"
/gene_synonym="MGC26081"
/gene_synonym="RBTN3"
/gene_synonym="RBTNL2"
/gene_synonym="Rhom-3"
/gene_synonym="RHOM3"
/db_xref="GeneID:55885"
/db_xref="MIM:180386"
CDS 128..565
/gene="LMO3"
/gene_synonym="DAT1"
/gene_synonym="MGC26081"
/gene_synonym="RBTN3"
/gene_synonym="RBTNL2"
/gene_synonym="Rhom-3"
/gene_synonym="RHOM3"
/codon_start=1
/product="LMO3 protein"
/protein_id="AAH50085.1"
/db_xref="GeneID:55885"
/db_xref="MIM:180386"
/translation="MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCD
CRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR"
BASE COUNT 1029 a 594 c 611 g 1149 t
ORIGIN
1 ggtcgactcc tgcagaggtc acattttgtg tgcgggtttg tccccagcgt ttgagaagcg
61 ctacaaagca gccactgtgc ttactgaacg gcctccccct gtatcgctta attgagaagg
121 tatacaaatg ctctcagtcc agccagacac caagccgaaa ggttgtgctg gctgcaaccg
181 aaagatcaag gaccggtatc ttctaaaggc actggacaaa tactggcatg aagactgcct
241 gaagtgtgcc tgctgtgact gtcgcttggg agaggtgggc tccaccctgt acactaaagc
301 taatcttatc ctttgtcgca gagactatct gaggctcttt ggtgtaacgg gaaactgcgc
361 tgcctgtagt aagctcatcc ctgcctttga gatggtgatg cgtgccaagg acaatgttta
421 ccacctggac tgctttgcat gtcagctttg taatcagaga ttttgtgttg gagacaaatt
481 tttcctaaag aataacatga tcctttgcca gacggactac gaggaaggtt taatgaaaga
541 aggttatgca ccccaggttc gctgatctat caacatcacc ccattaagaa tacaaagcac
601 tacattcttt tatctttttt gctccacatg tacataagaa ttgacacagg aacctactga
661 atagcgtaga tataggaagg caggatggtt atatggaata aaaggcggac tgcatctgta
721 tgtagtgaaa ttgccccagt tcagagttga atgtttatta ttaaagaaaa aagtaatgta
781 catatggctg gatttttttg cttgctattc gtttttgtgt cacttggcat gagatgttta
841 ttttggacta ttgtatataa tgtattgtaa tatttgaagc acaaatgtaa tacagtttta
901 ttgtgttacc atttgtgttc catttgcttc tttgtattgt tgcatttagt acaatcagtg
961 tttaaactta ctgtatattt atgctttctg tatttaccag ctattttaaa tgagctgtaa
1021 ctttctagta aagaattgaa aagtaaatct cactaatgat acacagatag ataaagcaag
1081 tctatcaaca ttaaaaatac taaaaaataa agacacacac agagcatttt agtgacatcc
1141 actacttatt gccgctatga gttagagtct atcagtgttc ttgttataac cccctatttt
1201 cagggggtta aaaatcagct ttaaaaaaat acataaaaat ttcatcttaa agcactttca
1261 ttttatacca acgtgaaaag tgccattttt agaataactt taaagcttaa caggtttcct
1321 tttaatatcc tttttttgtg tgctctttac ttacacaatg gctttgtttt gctttttcag
1381 ccacacccct tatgtgaact agtgcctttg ggtatcacgt aaaatttttt ccaaagggtt
1441 actttaaaaa tctgttacca caattatgag atgattttta agtgataaat taaacttctt
1501 cttgtataaa ttctgcccag atctctccac aagagctgag ggtttcataa ctttatggct
1561 taataaatgt atgacactga aaagatttga gtgtgaatct actgaaatca ctataatgca
1621 cattgaagct atgatggtat ttgagtagtg aggttacttt tgatcggagc aacataatgc
1681 tcatagaatc ttctagaaga agagaaacaa agggattgat aaaatgctga gaactagtga
1741 ttatatattt ttctgtattt acctgacatt tattttaatg ttcaaaaagt aaacacttta
1801 agtttgatgt gttttactct ctcattgttt taagtaattg ccaactcaga atacatcatt
1861 cttaggctga aatttgtctt tccatttttt aaggtgaaat agtactacct tacgtgatag
1921 catacaaaga agaaagctct agaaagagaa attatggaga atgattattt aaattacaat
1981 taaggaaatg agaatatgat cccctcttcc gagttgccca caaacttgct tctttgcttt
2041 tgctccctgt aatagaacta cttttcaaca aatctaattt tgcacggcac cgttaaccat
2101 attttcacta cagcaaactt agtgctatgt gttttctttt tctttgtttt tttcttgatc
2161 acttgtatag gaaacaatat tttccagtgt tatttgcata tatattttgt ccttccaata
2221 tatgcattac agatgaaaat taaatgttat acctgaattc ttgggttggg gccaaaatat
2281 taagctgaaa ataatgctgg tgtggatttg ttttaaaaca aagctttatt atgaacatgc
2341 atgtgaatct ggatattgcc tcttattttt aagaaaatgg ttctgtgaaa agtgaatgat
2401 atgtattttt ccaaatgctt catggttagg agtcttcaag ttccatgttc cccagatttg
2461 agatatacta aagaaagaaa ttcaaaagta gctatttggg gcccacaaaa ataactatta
2521 ttttagcctt agagccttac acttgtttca tgaagagaaa ggacttgcat aaccaaaata
2581 aacaaagcaa gacaaattaa aaatatgtgg gggagagatc agtgaaaagt ggttttctta
2641 atgcagccct gctggtcccc attaacaatt gcttgaaatt cacatggatg taaaattata
2701 attgtcagga tcttattcag atgatctttt aaggtttaac tggttttgct tttgtttatc
2761 tatatgtcaa aatacttgta aattgggaac aaacttctct cagcttcttg aagttgttca
2821 actatccttg ccactggaag accaaacaag gttttcactg ctttttcttt tacataatat
2881 gctgagaatt atttcttatg ctttttacta caaacaaaat tactcacctg gattaaagat
2941 taaggcctta atctgtttag attatcttta atctcaatga aatcgtgaaa taagacaaga
3001 atagtgtttc agctgtaggc aattttacag ctaattgccc ataaattgta gcatttattg
3061 acctgaagta ctaagctaat tgtcttgact actcaaagcc cctgaattgt tgtcaacttt
3121 cccctttgtg ttgtgtagcc ctaacgtcat ttagcttgtt gtctgatgcc tccagtagga
3181 cacctccgat ggagctttga tttctgagca gcgaaagctc ccttcctaag atgcatctcg
3241 cataggctgc ctatgatgaa ggaccgtgca cctccactcc aacagagtgc tgagtttaaa
3301 agttgacctg tgtttgtaat ttcactttca tcttgcttaa taaatatctg ctggattctt
3361 tcattcgaaa aaaaaaaaaa aaa
//