LOCUS BC050062 3709 bp mRNA linear HUM 21-JUL-2005 DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, E, mRNA (cDNA clone MGC:48280 IMAGE:5274802), complete cds. ACCESSION BC050062 VERSION BC050062.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3709) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3709) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 91 Row: e Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40805849. FEATURES Location/Qualifiers source 1..3709 /db_xref="H-InvDB:HIT000053390" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:48280 IMAGE:5274802" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3709 /gene="PTPRE" /gene_synonym="HPTPE" /gene_synonym="PTPE" /gene_synonym="R-PTP-EPSILON" /db_xref="GeneID:5791" /db_xref="MIM:600926" CDS 359..2461 /gene="PTPRE" /gene_synonym="HPTPE" /gene_synonym="PTPE" /gene_synonym="R-PTP-EPSILON" /codon_start=1 /product="PTPRE protein" /protein_id="AAH50062.1" /db_xref="GeneID:5791" /db_xref="MIM:600926" /translation="MEPLCPLLLVGFSLPLARALRGNETTADSNETTTTSGPPDPGAS QPLLAWLLLPLLLLLLVLLLAAYFFRFRKQRKAVVSTSDKKMPNGILEEQEQQRVMLL SRSPSGPKKYFPIPVEHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENR EKNRYPNILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDF WRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRK FCIQPQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVH CSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALL EYYLYGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNLPA NMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVE DFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGEITIEIKNDTLSEAISI RDFLVTLNQPQARQEEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNH PITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFC YKVVQDFIDIFSDYANFK" BASE COUNT 1050 a 921 c 868 g 870 t ORIGIN 1 agcggcttca ggaacccacg gcctctgcgc gtccccgcga cccttcttcg cgcccggcga 61 agacagccgg gcgccccgga gggcggcggg caggcgcccg ggagatgcgg agcctccgct 121 gcagcgcgat ctgcgcgacc agaccagccc ccccgagtaa gcgcttgcag ccagttgtct 181 agttgtcaga agccgagctc atcagcgggc tcctggtgtc ggcgttctgc tgctggaagg 241 tcagggagtt ccctggaccc cacggaagaa gctgtctcca tgaaggacag ggaccgtgcc 301 gtgaaccttt tattctccca ctgacatgac tatagccttc actttccctc ggtccaccat 361 ggagcccttg tgtccactcc tgctggtggg ttttagcttg ccgctcgcca gggctctcag 421 gggcaacgag accactgccg acagcaacga gacaaccacg acctcaggcc ctccggaccc 481 gggcgcctcc cagccgctgc tggcctggct gctactgccg ctgctgctcc tcctcctcgt 541 gctccttctc gccgcctact tcttcaggtt caggaagcag aggaaagctg tggtcagcac 601 cagcgacaag aagatgccca acggaatctt ggaggagcaa gagcagcaaa gggtgatgct 661 gctcagcagg tcaccctcag ggcccaagaa gtattttccc atccccgtgg agcacctgga 721 ggaggagatc cgtatcagat ccgccgacga ctgcaagcag tttcgggagg agttcaactc 781 attgccatct ggacacatac aaggaacttt tgaactggca aataaagaag aaaacagaga 841 aaaaaacaga tatcccaaca tccttcccaa tgaccattct agggtgattc tgagccaact 901 ggatggaatt ccctgttcag actacatcaa tgcttcctac atagatggtt acaaagagaa 961 gaataaattc atagcagctc aaggtcccaa acaggaaacg gttaacgact tctggagaat 1021 ggtctgggag caaaagtctg cgaccatcgt catgttaaca aacttgaaag aaaggaaaga 1081 ggaaaagtgc catcagtact ggcccgacca aggctgctgg acctatggaa acatccgggt 1141 gtgcgtggag gactgcgtgg ttttggtcga ctacaccatc cggaagttct gcatacagcc 1201 acagctcccc gacggctgca aagcccccag gctggtctca cagctgcact tcaccagctg 1261 gcccgacttc ggagtgcctt ttacccccat tgggatgctg aagttcctca agaaagtaaa 1321 gacgctcaac cccgtgcacg ctgggcccat cgtggtccac tgtagcgcgg gcgtgggccg 1381 gacgggcacc ttcattgtga tcgatgccat gatggccatg atgcacgcgg agcagaaggt 1441 ggatgtgttt gaatttgtgt ctcgaatccg taatcagcgc cctcagatgg ttcaaacgga 1501 tatgcagtac acgttcatct accaagcctt actcgagtac tacctctacg gggacacaga 1561 gctggacgtg tcctcactgg agaagcacct gcagaccatg cacggcacca caacccactt 1621 cgacaagatc gggctggagg aggagttcag gaaattgaca aatgtccgga tcatgaagga 1681 gaacatgagg acgggcaact tgccggcaaa catgaagaag gccagggtca tccagatcat 1741 cccgtatgac ttcaaccgag tgatcctttc catgaaaagg ggtcaagaat acacagacta 1801 catcaacgca tccttcatag acggctaccg acagaaggac tatttcatcg ccacccaggg 1861 gccactggca cacacggttg aggacttctg gaggatgatc tgggaatgga aatcccacac 1921 tatcgtgatg ctgacggagg tgcaggagag agagcaggat aaatgctacc agtattggcc 1981 aaccgagggc tcagttactc atggagaaat aacgattgag ataaagaatg ataccctttc 2041 agaagccatc agtatacgag actttctggt cactctcaat cagccccagg cccgccagga 2101 ggagcaggtc cgagtagtgc gccagtttca cttccacggc tggcctgaga tcgggattcc 2161 cgccgagggc aaaggcatga ttgacctcat cgcagccgtg cagaagcagc agcagcagac 2221 aggcaaccac cccatcaccg tgcactgcag tgccggagct gggcgaacag gtacattcat 2281 agccctcagc aacattttgg agcgagtaaa agccgagggg cttttagatg tatttcaagc 2341 tgtgaagagt ttacgacttc agagaccaca tatggtgcaa accctggaac agtatgaatt 2401 ctgctacaaa gtggtacaag attttattga tatattttct gattatgcta atttcaaatg 2461 aagattcctg ccttaaaata ttttttaatt taatggtcag tatattttgt aaaaatcatg 2521 ttaatttatt tcatagttga cattaatatc ttccctaatt tctttgtata tattttgtta 2581 tgccttaaag gccacctgct atacagttgt taaatcttaa atatgctttt taaaaattgg 2641 aataatgtat taaggtcaaa taatatccca taaaatatat atttctgcta atattagtaa 2701 atatcttaat ttttcattag attcatatca tttaatttca catattcaac acctttaaat 2761 gttgtaatct taatatgcga agtgtgcctc tgcaagatac taacacaaag ctcatgttaa 2821 gaaaacagtt gaggactcag aagtcagttg aaaatgcact ttcctaacag tgaattcaca 2881 accctgaaca gcagcatttt tggaaggcaa actgttcgtg atggtacaat gtaaatgggg 2941 acttctgtaa agttctcagt ttcggtccat gtggtttatc tttacatttt gaagatcaaa 3001 gaagtcttta caacctgaat ccaggtctaa aacacactag agtagctggt gactataaat 3061 aatatttaaa aatgctgtgt atacaccatc aagactgtgt ctacactatc ttggctgaac 3121 gagaagagat gtaaatgctg ggtggtcccg ttgacccacg gcgttgggta caacaaaacc 3181 agccatcgga gttacacccc aaagcaccat ttgctgtcca gctgcctgtc gtttggccca 3241 gaccaccctc agaaaaaaac cagctgcctc tcccattctc ccctcccgtt ctgccacagc 3301 ggcctgggct ggtccagtgc tatgcctgga ggctcaacac aaaacttccc atccaaacat 3361 tcagatgaac tgagcgtctt acacacggag tacagaggag cacacattgg gatagaaaca 3421 gtagaataac cacgggcaat taaactttaa attttctgag cagcattttg gtatttaaac 3481 atttcttgta aaaagctgag acagtttgta agaaaagaat ccttaaaatc tagatttata 3541 ccatttttta aagtcccacc tttcaatgtt taataaaaca aaaagaaatc cttaatctaa 3601 aagctaaatt atttttgaat ggaaatacta ctgagaccat tgacactgga taacagtaat 3661 gatcccatta ccagataaga ttgactgatg gggaaaaaaa aaaaaaaaa //